HVHNVAFXX_n01_2029_d-2_nw.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVHNVAFXX_n01_2029_d-2_nw.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	479402
Sequences flagged as poor quality	0
Sequence length	150
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA	1015	0.21172210378763542	No Hit
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG	970	0.20233540953104073	No Hit
GTATAGACATCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT	748	0.1560277178651737	No Hit
ATGTAATACCTATCAAAATACCAATAACACTTCTCACAGAACTAGAACAA	686	0.14309493911164325	No Hit
GGGGAAGTGGGAGAGGGAAAAGGAGAAGGAAGCTTCCCTCGGAGCAGGAA	570	0.11889812725019921	No Hit
GTATAGACCTCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT	567	0.1182723476330929	No Hit
CCCCCAAAGACCAGAAAATTGCTCCAGGTCCAACTGCCCAGATCCTTGGC	498	0.10387941643964774	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGAAA	450	0.0	83.19633	1
CGAAAGC	505	0.0	75.56102	3
GCGAAAG	520	0.0	71.996826	2
TATACCG	30	0.0019893334	71.996826	5
ATACCGC	30	0.0019893334	71.996826	6
GAGCAAA	845	0.0	64.75453	1
CGGCTAG	35	0.003665106	61.71156	8
GCAAAAG	1065	0.0	51.37801	3
GAGCGAA	245	0.0	47.01833	1
AGCAAAA	1285	0.0	42.581776	2
CAAAAGC	1405	0.0	40.4822	4
GCCTTAC	90	7.789876E-5	39.99823	1
CAGCTCG	420	0.0	35.99841	9
GGAGCGA	185	1.7439197E-7	31.133759	1
AAAAGCA	1855	0.0	31.04984	5
TATACAG	650	0.0	31.014015	5
TACCGCT	95	0.0048885816	30.31445	7
TACAGCT	695	0.0	27.969988	7
GTCTTAG	155	5.761537E-5	27.869736	1
AAAGCAG	2460	0.0	27.218311	6