FastQCFastQC Report
Fri 12 Jan 2018
HVHMTAFXX_n02_ah8583b-030316.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHMTAFXX_n02_ah8583b-030316.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13977720
Sequences flagged as poor quality0
Sequence length50
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG334310.23917348465987298No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGGG12700.013.85699138
AGGGGGG38650.07.797748639
ATAGGGG14700.07.33210637
GGGAGAG18700.05.8844655
GAGCGGG7602.4225028E-65.79026659
GGGGAGA22700.05.72044234
AGGGGGT8555.622005E-75.660499639
GGGGGGA45050.05.27920962
Produced by FastQC (version 0.11.2)