FastQCFastQC Report
Fri 12 Jan 2018
HVHMTAFXX_n01_ah8189a-031517.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHMTAFXX_n01_ah8189a-031517.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13582200
Sequences flagged as poor quality0
Sequence length50
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTCACG27900.024.20753328
CGATCAG28450.023.66300633
GCACACG29850.023.14127311
GTCACGA29250.022.78941329
ACACGTC31500.022.0688713
CACGATC31200.022.00016631
CACACGT33900.020.31171612
GATCGGA32350.020.2047581
GATCTCG32150.019.91335139
ACGTCTG34800.019.849715
CACGTCT35150.019.58946414
CGTCTGA35400.019.51326616
CAGTCAC35900.019.1806427
CGTATGC36050.018.91803244
TCCAGTC38400.018.39015425
AGCACAC38400.017.98872610
CCAGTCA39750.017.5442726
CTCGTAT38700.017.33863342
TCACGAT39600.016.8888330
ATCTCGT39600.016.77802840
Produced by FastQC (version 0.11.2)