[2022-11-02 17:47:02,305] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-11-02 17:47:02,305] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-11-02 17:47:02,305] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-11-02 17:47:02,306] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-11-02 17:47:02,306] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-11-02 17:47:02,307] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVHMMBGXM/merged [2022-11-02 17:47:02,801] multiqc [WARNING] MultiQC Version v1.13 now available! [2022-11-02 17:47:02,801] multiqc [INFO ] This is MultiQC v1.9 [2022-11-02 17:47:02,801] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVHMMBGXM/merged [2022-11-02 17:47:02,801] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HVHMMBGXM/merged [2022-11-02 17:47:02,801] multiqc [INFO ] Template : default [2022-11-02 17:47:02,801] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-11-02 17:47:02,801] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HVHMMBGXM/merged [2022-11-02 17:47:02,801] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-11-02 17:47:02,802] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-26594610/tmpck_dbrbf [2022-11-02 17:47:02,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R17rc_fastqc.html [2022-11-02 17:47:02,919] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded 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17:47:03,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_undetermined_fastqc.html [2022-11-02 17:47:03,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_undetermined_fastqc.html [2022-11-02 17:47:03,545] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R10rc_fastqc.html [2022-11-02 17:47:03,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R10rc_fastqc.html [2022-11-02 17:47:03,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R09rc_fastqc.html [2022-11-02 17:47:03,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R09rc_fastqc.html [2022-11-02 17:47:03,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R22_2_fastqc.html [2022-11-02 17:47:03,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R22_2_fastqc.html [2022-11-02 17:47:03,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R05_fastqc.html [2022-11-02 17:47:03,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R05_fastqc.html [2022-11-02 17:47:03,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R22rc_fastqc.html [2022-11-02 17:47:03,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R22rc_fastqc.html [2022-11-02 17:47:03,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded 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HVHMMBGXM_n01_R12_fastqc.html [2022-11-02 17:47:03,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R12_fastqc.html [2022-11-02 17:47:03,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R13rc_fastqc.html [2022-11-02 17:47:03,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R13rc_fastqc.html [2022-11-02 17:47:03,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R07_fastqc.html [2022-11-02 17:47:03,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R07_fastqc.html [2022-11-02 17:47:03,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R09_fastqc.html [2022-11-02 17:47:03,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R09_fastqc.html [2022-11-02 17:47:03,969] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R12rc_fastqc.html [2022-11-02 17:47:03,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R12rc_fastqc.html [2022-11-02 17:47:03,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R11rc_fastqc.html [2022-11-02 17:47:03,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R11rc_fastqc.html [2022-11-02 17:47:04,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R03rc_fastqc.html [2022-11-02 17:47:04,047] multiqc [DEBUG ] File ignored by 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HVHMMBGXM_n01_R01rc_fastqc.html [2022-11-02 17:47:04,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R18_2_fastqc.html [2022-11-02 17:47:04,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R18_2_fastqc.html [2022-11-02 17:47:04,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R15rc_fastqc.html [2022-11-02 17:47:04,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R15rc_fastqc.html [2022-11-02 17:47:04,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R03_fastqc.html [2022-11-02 17:47:04,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R03_fastqc.html [2022-11-02 17:47:04,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R16rc_fastqc.html [2022-11-02 17:47:04,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R16rc_fastqc.html [2022-11-02 17:47:04,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R21_2_fastqc.html [2022-11-02 17:47:04,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R21_2_fastqc.html [2022-11-02 17:47:04,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R01_fastqc.html [2022-11-02 17:47:04,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R01_fastqc.html [2022-11-02 17:47:04,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R04_fastqc.html [2022-11-02 17:47:04,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R04_fastqc.html [2022-11-02 17:47:04,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R19_2_fastqc.html [2022-11-02 17:47:04,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R19_2_fastqc.html [2022-11-02 17:47:04,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R21rc_fastqc.html [2022-11-02 17:47:04,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R21rc_fastqc.html [2022-11-02 17:47:04,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R20_2_fastqc.html [2022-11-02 17:47:04,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R20_2_fastqc.html [2022-11-02 17:47:04,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R05rc_fastqc.html [2022-11-02 17:47:04,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R05rc_fastqc.html [2022-11-02 17:47:04,755] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R14_2_fastqc.html [2022-11-02 17:47:04,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R14_2_fastqc.html [2022-11-02 17:47:04,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R15_2_fastqc.html [2022-11-02 17:47:04,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R15_2_fastqc.html [2022-11-02 17:47:04,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R07rc_fastqc.html [2022-11-02 17:47:04,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R07rc_fastqc.html [2022-11-02 17:47:04,922] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R06_fastqc.html [2022-11-02 17:47:04,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R06_fastqc.html [2022-11-02 17:47:04,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R17_2_fastqc.html [2022-11-02 17:47:04,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R17_2_fastqc.html [2022-11-02 17:47:05,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R24_2_fastqc.html [2022-11-02 17:47:05,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R24_2_fastqc.html [2022-11-02 17:47:05,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R14rc_fastqc.html [2022-11-02 17:47:05,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R14rc_fastqc.html [2022-11-02 17:47:05,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R11_fastqc.html [2022-11-02 17:47:05,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R11_fastqc.html [2022-11-02 17:47:05,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R19rc_fastqc.html [2022-11-02 17:47:05,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R19rc_fastqc.html [2022-11-02 17:47:05,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R18rc_fastqc.html [2022-11-02 17:47:05,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHMMBGXM_n01_R18rc_fastqc.html [2022-11-02 17:47:05,467] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-11-02 17:47:05,469] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-11-02 17:47:05,499] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 49 samples (table) [2022-11-02 17:47:05,501] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-11-02 17:47:05,510] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-11-02 17:47:05,516] multiqc [DEBUG ] No samples found: conpair [2022-11-02 17:47:05,521] multiqc [DEBUG ] No samples found: peddy [2022-11-02 17:47:05,526] multiqc [DEBUG ] No samples found: somalier [2022-11-02 17:47:05,531] multiqc [DEBUG ] No samples found: methylQA [2022-11-02 17:47:05,539] multiqc [DEBUG ] No samples found: mosdepth [2022-11-02 17:47:05,543] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-11-02 17:47:05,547] multiqc [DEBUG ] No samples found: qualimap [2022-11-02 17:47:05,551] multiqc [DEBUG ] No samples found: preseq [2022-11-02 17:47:05,556] multiqc [DEBUG ] No samples found: quast [2022-11-02 17:47:05,561] multiqc [DEBUG ] No samples found: qorts [2022-11-02 17:47:05,566] multiqc [DEBUG ] No samples found: rna_seqc [2022-11-02 17:47:05,571] multiqc [DEBUG ] No samples found: rockhopper [2022-11-02 17:47:05,575] multiqc [DEBUG ] No samples found: rsem [2022-11-02 17:47:05,587] multiqc [DEBUG ] No samples found: rseqc [2022-11-02 17:47:05,592] multiqc [DEBUG ] No samples found: busco [2022-11-02 17:47:05,596] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-11-02 17:47:05,602] multiqc [DEBUG ] No samples found: disambiguate [2022-11-02 17:47:05,606] multiqc [DEBUG ] No samples found: supernova [2022-11-02 17:47:05,619] multiqc [DEBUG ] No samples found: deeptools [2022-11-02 17:47:05,623] multiqc [DEBUG ] No samples found: sargasso [2022-11-02 17:47:05,628] multiqc [DEBUG ] No samples found: verifybamid [2022-11-02 17:47:05,633] multiqc [DEBUG ] No samples found: mirtrace [2022-11-02 17:47:05,638] multiqc [DEBUG ] No samples found: happy [2022-11-02 17:47:05,642] multiqc [DEBUG ] No samples found: mirtop [2022-11-02 17:47:05,649] multiqc [DEBUG ] No samples found: homer [2022-11-02 17:47:05,653] multiqc [DEBUG ] No samples found: macs2 [2022-11-02 17:47:05,658] multiqc [DEBUG ] No samples found: theta2 [2022-11-02 17:47:05,662] multiqc [DEBUG ] No samples found: snpeff [2022-11-02 17:47:05,669] multiqc [DEBUG ] No samples found: gatk [2022-11-02 17:47:05,673] multiqc [DEBUG ] No samples found: htseq [2022-11-02 17:47:05,679] multiqc [DEBUG ] No samples found: bcftools [2022-11-02 17:47:05,683] multiqc [DEBUG ] No samples found: featureCounts [2022-11-02 17:47:05,690] multiqc [DEBUG ] No samples found: fgbio [2022-11-02 17:47:05,703] multiqc [DEBUG ] No samples found: dragen [2022-11-02 17:47:05,707] multiqc [DEBUG ] No samples found: dedup [2022-11-02 17:47:05,712] multiqc [DEBUG ] No samples found: damageprofiler [2022-11-02 17:47:05,734] multiqc [DEBUG ] No samples found: biobambam2 [2022-11-02 17:47:05,738] multiqc [DEBUG ] No samples found: mtnucratio [2022-11-02 17:47:05,741] multiqc [DEBUG ] No samples found: picard [2022-11-02 17:47:05,746] multiqc [DEBUG ] No samples found: prokka [2022-11-02 17:47:05,750] multiqc [DEBUG ] No samples found: samblaster [2022-11-02 17:47:05,758] multiqc [DEBUG ] No samples found: samtools [2022-11-02 17:47:05,763] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-11-02 17:47:05,768] multiqc [DEBUG ] No samples found: bamtools [2022-11-02 17:47:05,772] multiqc [DEBUG ] No samples found: jellyfish [2022-11-02 17:47:05,779] multiqc [DEBUG ] No samples found: vcftools [2022-11-02 17:47:05,784] multiqc [DEBUG ] No samples found: longranger [2022-11-02 17:47:05,789] multiqc [DEBUG ] No samples found: stacks [2022-11-02 17:47:05,793] multiqc [DEBUG ] No samples found: varscan2 [2022-11-02 17:47:05,806] multiqc [DEBUG ] No samples found: bbmap [2022-11-02 17:47:05,811] multiqc [DEBUG ] No samples found: bismark [2022-11-02 17:47:05,816] multiqc [DEBUG ] No samples found: biscuit [2022-11-02 17:47:05,821] multiqc [DEBUG ] No samples found: hicexplorer [2022-11-02 17:47:05,825] multiqc [DEBUG ] No samples found: hicup [2022-11-02 17:47:05,830] multiqc [DEBUG ] No samples found: hicpro [2022-11-02 17:47:05,834] multiqc [DEBUG ] No samples found: salmon [2022-11-02 17:47:05,839] multiqc [DEBUG ] No samples found: kallisto [2022-11-02 17:47:05,844] multiqc [DEBUG ] No samples found: slamdunk [2022-11-02 17:47:05,848] multiqc [DEBUG ] No samples found: star [2022-11-02 17:47:05,853] multiqc [DEBUG ] No samples found: hisat2 [2022-11-02 17:47:05,858] multiqc [DEBUG ] No samples found: tophat [2022-11-02 17:47:05,863] multiqc [DEBUG ] No samples found: bowtie2 [2022-11-02 17:47:05,867] multiqc [DEBUG ] No samples found: bowtie1 [2022-11-02 17:47:05,872] multiqc [DEBUG ] No samples found: snpsplit [2022-11-02 17:47:05,876] multiqc [DEBUG ] No samples found: kat [2022-11-02 17:47:05,881] multiqc [DEBUG ] No samples found: leehom [2022-11-02 17:47:05,885] multiqc [DEBUG ] No samples found: adapterRemoval [2022-11-02 17:47:05,890] multiqc [DEBUG ] No samples found: clipandmerge [2022-11-02 17:47:05,894] multiqc [DEBUG ] No samples found: cutadapt [2022-11-02 17:47:05,899] multiqc [DEBUG ] No samples found: flexbar [2022-11-02 17:47:05,903] multiqc [DEBUG ] No samples found: kaiju [2022-11-02 17:47:05,909] multiqc [DEBUG ] No samples found: kraken [2022-11-02 17:47:05,914] multiqc [DEBUG ] No samples found: malt [2022-11-02 17:47:05,918] multiqc [DEBUG ] No samples found: trimmomatic [2022-11-02 17:47:05,922] multiqc [DEBUG ] No samples found: sickle [2022-11-02 17:47:05,927] multiqc [DEBUG ] No samples found: skewer [2022-11-02 17:47:05,931] multiqc [DEBUG ] No samples found: sortmerna [2022-11-02 17:47:05,936] multiqc [DEBUG ] No samples found: biobloomtools [2022-11-02 17:47:05,940] multiqc [DEBUG ] No samples found: fastq_screen [2022-11-02 17:47:05,945] multiqc [DEBUG ] No samples found: afterqc [2022-11-02 17:47:05,950] multiqc [DEBUG ] No samples found: fastp [2022-11-02 17:47:06,606] multiqc.modules.fastqc.fastqc [INFO ] Found 49 reports [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R12' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R03rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R24rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R01rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R20rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R07rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R22_2' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R21rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R10rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R09' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R22rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R06rc' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R01' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R11' [2022-11-02 17:47:06,607] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R18rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R17rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R13rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R12rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R15rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R10' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R19rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R08' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R23_2' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R24_2' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R14rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R05rc' [2022-11-02 17:47:06,608] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHMMBGXM_n01_R23rc' [2022-11-02 17:47:06,828] multiqc [DEBUG ] No samples found: pycoqc [2022-11-02 17:47:06,833] multiqc [DEBUG ] No samples found: minionqc [2022-11-02 17:47:06,838] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-11-02 17:47:06,843] multiqc [DEBUG ] No samples found: clusterflow [2022-11-02 17:47:06,848] multiqc [DEBUG ] No samples found: bcl2fastq [2022-11-02 17:47:06,853] multiqc [DEBUG ] No samples found: interop [2022-11-02 17:47:06,857] multiqc [DEBUG ] No samples found: ivar [2022-11-02 17:47:06,862] multiqc [DEBUG ] No samples found: flash [2022-11-02 17:47:06,867] multiqc [DEBUG ] No samples found: seqyclean [2022-11-02 17:47:06,867] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2022-11-02 17:47:06,867] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-11-02 17:47:06,867] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-11-02 17:47:06,867] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-11-02 17:47:06,923] multiqc [INFO ] Compressing plot data [2022-11-02 17:47:07,286] multiqc [INFO ] Report : multiqc_report.html [2022-11-02 17:47:07,287] multiqc [INFO ] Data : multiqc_data [2022-11-02 17:47:07,287] multiqc [DEBUG ] Moving data file from '/state/partition1/job-26594610/tmpck_dbrbf/multiqc_data' to '/scratch/gencore/logs/html/HVHMMBGXM/merged/multiqc_data' [2022-11-02 17:47:07,421] multiqc [INFO ] MultiQC complete