FastQCFastQC Report
Thu 22 Feb 2024
HVH3FDRX3_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVH3FDRX3_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences902107327
Sequences flagged as poor quality0
Sequence length10
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGTATCCA36209021540.13826339313171No Hit
CCGGCAACTG20525350422.7526700933225No Hit
GTAACATGCG19792513221.940308661299674No Hit
GGGGGGGGGG460299345.102489761730979No Hit
GTCCCATCAA127789901.41657091318581No Hit
CTCCTTTAGA74502400.8258706893309603No Hit
AAACTATCCA35289330.39118771063922414No Hit
AAACAATCAA20271840.22471649872765082No Hit
AAAGTATCCA18241380.20220853388545862No Hit
GTAACATGCA14370320.15929723182483363No Hit
AATGTATCAA13438060.14896298475580388No Hit
CAGGCAACTG13249090.14686822292044194No Hit
AAACTATACA12950250.14355553504998855No Hit
GTAACATCCA12567750.13931546307017192No Hit
AAACAATCCA12258510.13588748958248956No Hit
CGGCAACTGA11136170.12344617615548975No Hit
CACCCAACTA10186690.11292104270870199No Hit
CCGGCAACTA10132560.11232100324133605No Hit
GTAACATCAA9159010.10152905010159616No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)