FastQCFastQC Report
Tue 23 Jul 2019
HVGW3BGXB_n01_dpErk_WE_514hpf_H1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVGW3BGXB_n01_dpErk_WE_514hpf_H1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11410106
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA23350.016.4421481
CTGGACG17250.016.0705781
GGGCTAC19800.016.0565661
GGGACCT17450.015.4450991
AGGGAAG11450.015.2764053
ATGGGAG19100.015.1475511
GGCACGT18750.015.0196111
GCCCGAA17250.014.9864511
AAACGCT20350.014.9739151
AGCGCCA26700.014.8735951
GGGCCAT20650.014.8629211
TGATGAG13600.014.8027273
AAACCCA19500.014.7804181
TGCGACG20500.014.7570281
AATGGAA24400.014.6525621
GAAGCCC25050.014.5358451
GAGACCC21800.014.4825631
TAACGAC18100.014.40422251
TTGACCC23000.014.3965591
TGGAACT20650.014.3834721
Produced by FastQC (version 0.11.5)