FastQCFastQC Report
Fri 25 Feb 2022
HVGTVDRXY_n02_WT3_N_5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVGTVDRXY_n02_WT3_N_5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17120709
Sequences flagged as poor quality0
Sequence length101
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG803740.46945485727255803No Hit
TTTTTTTTTGTAAACACTTAATCATAATATTAATTCGTATATAATTTAGC582150.34002680613285347No Hit
TTTTTTTTTGTTTTCAATTAATATTCAAGATACATATAACACTTATATAT427650.24978521625477076No Hit
TTTTTTTTTCTCTTCAATGTAAGATATTTATTTCAAAAACTCATTATATA215360.12578918314656246No Hit
TTTTTTTTTATCATTTAATTAGTTCATATATTCAAGATGTTCCTATAAAA215350.1257833422669587No Hit
TTTTTTTTTCACGTAAACACTTAATCATAATATTAATTCGTATATAATTT212770.12427639532918876No Hit
TTTTTTTTTCATTTAATTAGTTCATATATTCAAGATGTTCCTATAAAAGA192850.11264136315850004No Hit
TTTTTTTTTAAACACTTAATCATAATATTAATTCGTATATAATTTAGCTA184620.10783431924460604No Hit
TTTTTTTTTCAATGTAAGATATTTATTTCAAAAACTCATTATATAACTTC171790.10034047071298274No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)