FastQCFastQC Report
Fri 19 Jul 2019
HVGNWBGXB_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVGNWBGXB_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences281410717
Sequences flagged as poor quality0
Sequence length8
%GC65

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGAGC17096546460.75300394476447No Hit
TAAGGCGA6096285121.663301117277634No Hit
GGGGGGGG4216320814.982801099220397No Hit
TAATGAGA5226910.18573955021052024No Hit
CCCTGCGC4665230.16578011135233345No Hit
TCCTGCGC3526420.12531221403341222No Hit
TCCTGACA2980820.10592418198486733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)