FastQCFastQC Report
Sat 12 Mar 2022
HVGL3DRXY_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVGL3DRXY_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1069827746
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACGAA19908342318.608923141539087No Hit
CAATACCC17704211616.54865623573012No Hit
TGTCTATG16295395815.231793960221331No Hit
GTGGGTGT13459210712.580726897692557No Hit
ACTGCTCG904968438.459010652729884No Hit
TGGTAAAC816125827.628572198201336No Hit
CTCCTCTA804740937.522154225377513No Hit
GAAAGGGT778523267.277089820401797No Hit
GGGGGGGG272510082.5472332440329137No Hit
CAATACCA16946110.15840035990242488No Hit
GTGGTGTA15415190.14409039266027784No Hit
TGTCTATA11757330.10989928092592206No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)