[2021-02-12 04:48:32,630] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-02-12 04:48:32,630] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-02-12 04:48:32,630] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-02-12 04:48:32,631] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-02-12 04:48:32,631] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-02-12 04:48:32,631] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVG3CDRXX/merged [2021-02-12 04:48:34,162] multiqc [DEBUG ] Latest MultiQC version is v1.9 [2021-02-12 04:48:34,162] multiqc [INFO ] This is MultiQC v1.9 [2021-02-12 04:48:34,162] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVG3CDRXX/merged [2021-02-12 04:48:34,162] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HVG3CDRXX/merged [2021-02-12 04:48:34,162] multiqc [INFO ] Template : default [2021-02-12 04:48:34,162] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-02-12 04:48:34,162] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HVG3CDRXX/merged [2021-02-12 04:48:34,163] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-02-12 04:48:34,163] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-2644270/tmpcvu519y_ [2021-02-12 04:48:34,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D401_fastqc.html [2021-02-12 04:48:34,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D401_fastqc.html [2021-02-12 04:48:34,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search 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04:48:39,508] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D497_fastqc.html [2021-02-12 04:48:39,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D497_fastqc.html [2021-02-12 04:48:39,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D309_fastqc.html [2021-02-12 04:48:39,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D309_fastqc.html [2021-02-12 04:48:39,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D348_fastqc.html [2021-02-12 04:48:39,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D348_fastqc.html [2021-02-12 04:48:39,685] multiqc [DEBUG ] File ignored by 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[2021-02-12 04:48:40,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D482_fastqc.html [2021-02-12 04:48:40,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D203_fastqc.html [2021-02-12 04:48:40,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D203_fastqc.html [2021-02-12 04:48:40,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D323_fastqc.html [2021-02-12 04:48:40,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D323_fastqc.html [2021-02-12 04:48:40,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D284_fastqc.html [2021-02-12 04:48:40,224] multiqc [DEBUG ] File 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[2021-02-12 04:48:41,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D322_fastqc.html [2021-02-12 04:48:41,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D340_fastqc.html [2021-02-12 04:48:41,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D340_fastqc.html [2021-02-12 04:48:41,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D310_fastqc.html [2021-02-12 04:48:41,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D310_fastqc.html [2021-02-12 04:48:41,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D196_fastqc.html [2021-02-12 04:48:41,536] multiqc [DEBUG ] File 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04:48:42,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D244_fastqc.html [2021-02-12 04:48:42,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D244_fastqc.html [2021-02-12 04:48:42,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D291_fastqc.html [2021-02-12 04:48:42,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D291_fastqc.html [2021-02-12 04:48:42,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D359_fastqc.html [2021-02-12 04:48:42,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D359_fastqc.html [2021-02-12 04:48:42,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D166_fastqc.html [2021-02-12 04:48:42,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D166_fastqc.html [2021-02-12 04:48:42,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D481_fastqc.html [2021-02-12 04:48:42,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D481_fastqc.html [2021-02-12 04:48:42,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D439_fastqc.html [2021-02-12 04:48:42,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D439_fastqc.html [2021-02-12 04:48:42,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D16_fastqc.html [2021-02-12 04:48:42,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D16_fastqc.html [2021-02-12 04:48:42,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D263_fastqc.html [2021-02-12 04:48:42,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D263_fastqc.html [2021-02-12 04:48:42,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D349_fastqc.html [2021-02-12 04:48:42,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D349_fastqc.html [2021-02-12 04:48:42,679] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D382_fastqc.html [2021-02-12 04:48:42,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D382_fastqc.html [2021-02-12 04:48:42,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D487_fastqc.html [2021-02-12 04:48:42,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D487_fastqc.html [2021-02-12 04:48:42,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D299_fastqc.html [2021-02-12 04:48:42,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D299_fastqc.html [2021-02-12 04:48:42,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D364_fastqc.html [2021-02-12 04:48:42,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D364_fastqc.html [2021-02-12 04:48:42,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D340_fastqc.html [2021-02-12 04:48:42,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D340_fastqc.html [2021-02-12 04:48:42,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D333_fastqc.html [2021-02-12 04:48:42,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D333_fastqc.html [2021-02-12 04:48:43,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D342_fastqc.html [2021-02-12 04:48:43,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D342_fastqc.html [2021-02-12 04:48:43,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D30_fastqc.html [2021-02-12 04:48:43,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D30_fastqc.html [2021-02-12 04:48:43,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D349_fastqc.html [2021-02-12 04:48:43,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D349_fastqc.html [2021-02-12 04:48:43,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D8_fastqc.html [2021-02-12 04:48:43,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D8_fastqc.html [2021-02-12 04:48:43,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D323_fastqc.html [2021-02-12 04:48:43,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D323_fastqc.html [2021-02-12 04:48:43,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D184_fastqc.html [2021-02-12 04:48:43,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D184_fastqc.html [2021-02-12 04:48:43,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D473_fastqc.html [2021-02-12 04:48:43,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D473_fastqc.html [2021-02-12 04:48:43,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D353_fastqc.html [2021-02-12 04:48:43,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D353_fastqc.html [2021-02-12 04:48:43,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D344_fastqc.html [2021-02-12 04:48:43,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D344_fastqc.html [2021-02-12 04:48:43,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D330_fastqc.html [2021-02-12 04:48:43,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D330_fastqc.html [2021-02-12 04:48:43,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D315_fastqc.html [2021-02-12 04:48:43,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D315_fastqc.html [2021-02-12 04:48:43,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D467_fastqc.html [2021-02-12 04:48:43,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D467_fastqc.html [2021-02-12 04:48:43,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D439_fastqc.html [2021-02-12 04:48:43,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D439_fastqc.html [2021-02-12 04:48:43,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D161_fastqc.html [2021-02-12 04:48:43,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D161_fastqc.html [2021-02-12 04:48:43,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D312_fastqc.html [2021-02-12 04:48:43,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D312_fastqc.html [2021-02-12 04:48:43,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D343_fastqc.html [2021-02-12 04:48:43,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D343_fastqc.html [2021-02-12 04:48:43,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D495_fastqc.html [2021-02-12 04:48:43,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D495_fastqc.html [2021-02-12 04:48:43,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D307_fastqc.html [2021-02-12 04:48:43,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D307_fastqc.html [2021-02-12 04:48:44,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D498_fastqc.html [2021-02-12 04:48:44,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D498_fastqc.html [2021-02-12 04:48:44,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D271_fastqc.html [2021-02-12 04:48:44,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D271_fastqc.html [2021-02-12 04:48:44,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D501_fastqc.html [2021-02-12 04:48:44,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D501_fastqc.html [2021-02-12 04:48:44,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D445_fastqc.html [2021-02-12 04:48:44,185] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D445_fastqc.html [2021-02-12 04:48:44,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D353_fastqc.html [2021-02-12 04:48:44,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D353_fastqc.html [2021-02-12 04:48:44,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D306_fastqc.html [2021-02-12 04:48:44,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D306_fastqc.html [2021-02-12 04:48:44,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D267_fastqc.html [2021-02-12 04:48:44,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D267_fastqc.html [2021-02-12 04:48:44,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D460_fastqc.html [2021-02-12 04:48:44,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D460_fastqc.html [2021-02-12 04:48:44,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D454_fastqc.html [2021-02-12 04:48:44,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D454_fastqc.html [2021-02-12 04:48:44,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D350_fastqc.html [2021-02-12 04:48:44,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D350_fastqc.html [2021-02-12 04:48:44,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D171_fastqc.html [2021-02-12 04:48:44,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D171_fastqc.html [2021-02-12 04:48:44,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D504_fastqc.html [2021-02-12 04:48:44,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D504_fastqc.html [2021-02-12 04:48:44,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D357_fastqc.html [2021-02-12 04:48:44,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D357_fastqc.html [2021-02-12 04:48:44,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D303_fastqc.html [2021-02-12 04:48:44,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D303_fastqc.html [2021-02-12 04:48:44,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D289_fastqc.html [2021-02-12 04:48:44,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D289_fastqc.html [2021-02-12 04:48:44,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D420_fastqc.html [2021-02-12 04:48:44,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D420_fastqc.html [2021-02-12 04:48:44,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D430_fastqc.html [2021-02-12 04:48:44,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D430_fastqc.html [2021-02-12 04:48:45,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D161_fastqc.html [2021-02-12 04:48:45,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D161_fastqc.html [2021-02-12 04:48:45,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D315_fastqc.html [2021-02-12 04:48:45,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D315_fastqc.html [2021-02-12 04:48:45,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D453_fastqc.html [2021-02-12 04:48:45,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D453_fastqc.html [2021-02-12 04:48:45,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D166_fastqc.html [2021-02-12 04:48:45,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D166_fastqc.html [2021-02-12 04:48:45,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D348_fastqc.html [2021-02-12 04:48:45,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D348_fastqc.html [2021-02-12 04:48:45,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D292_fastqc.html [2021-02-12 04:48:45,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D292_fastqc.html [2021-02-12 04:48:45,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D128_fastqc.html [2021-02-12 04:48:45,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n02_D128_fastqc.html [2021-02-12 04:48:45,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D134_fastqc.html [2021-02-12 04:48:45,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D134_fastqc.html [2021-02-12 04:48:45,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D316_fastqc.html [2021-02-12 04:48:45,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D316_fastqc.html [2021-02-12 04:48:45,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D376_fastqc.html [2021-02-12 04:48:45,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVG3CDRXX_n01_D376_fastqc.html [2021-02-12 04:48:46,091] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-02-12 04:48:46,097] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-02-12 04:48:46,153] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 95 samples (table) [2021-02-12 04:48:46,163] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-02-12 04:48:46,164] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-02-12 04:48:46,176] multiqc [DEBUG ] No samples found: conpair [2021-02-12 04:48:46,193] multiqc [DEBUG ] No samples found: peddy [2021-02-12 04:48:46,208] multiqc [DEBUG ] No samples found: somalier [2021-02-12 04:48:46,223] multiqc [DEBUG ] No samples found: methylQA [2021-02-12 04:48:46,261] multiqc [DEBUG ] No samples found: mosdepth [2021-02-12 04:48:46,275] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-02-12 04:48:46,284] multiqc [DEBUG ] No samples found: qualimap [2021-02-12 04:48:46,303] multiqc [DEBUG ] No samples found: preseq [2021-02-12 04:48:46,324] multiqc [DEBUG ] No samples found: quast [2021-02-12 04:48:46,346] multiqc [DEBUG ] No samples found: qorts [2021-02-12 04:48:46,371] multiqc [DEBUG ] No samples found: rna_seqc [2021-02-12 04:48:46,393] multiqc [DEBUG ] No samples found: rockhopper [2021-02-12 04:48:46,412] multiqc [DEBUG ] No samples found: rsem [2021-02-12 04:48:46,458] multiqc [DEBUG ] No samples found: rseqc [2021-02-12 04:48:46,475] multiqc [DEBUG ] No samples found: busco [2021-02-12 04:48:46,492] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-02-12 04:48:46,507] multiqc [DEBUG ] No samples found: disambiguate [2021-02-12 04:48:46,526] multiqc [DEBUG ] No samples found: supernova [2021-02-12 04:48:46,599] multiqc [DEBUG ] No samples found: deeptools [2021-02-12 04:48:46,621] multiqc [DEBUG ] No samples found: sargasso [2021-02-12 04:48:46,640] multiqc [DEBUG ] No samples found: verifybamid [2021-02-12 04:48:46,654] multiqc [DEBUG ] No samples found: mirtrace [2021-02-12 04:48:46,672] multiqc [DEBUG ] No samples found: happy [2021-02-12 04:48:46,693] multiqc [DEBUG ] No samples found: mirtop [2021-02-12 04:48:46,726] multiqc [DEBUG ] No samples found: homer [2021-02-12 04:48:46,746] multiqc [DEBUG ] No samples found: macs2 [2021-02-12 04:48:46,762] multiqc [DEBUG ] No samples found: theta2 [2021-02-12 04:48:46,781] multiqc [DEBUG ] No samples found: snpeff [2021-02-12 04:48:46,813] multiqc [DEBUG ] No samples found: gatk [2021-02-12 04:48:46,830] multiqc [DEBUG ] No samples found: htseq [2021-02-12 04:48:46,851] multiqc [DEBUG ] No samples found: bcftools [2021-02-12 04:48:46,873] multiqc [DEBUG ] No samples found: featureCounts [2021-02-12 04:48:46,902] multiqc [DEBUG ] No samples found: fgbio [2021-02-12 04:48:46,958] multiqc [DEBUG ] No samples found: dragen [2021-02-12 04:48:46,974] multiqc [DEBUG ] No samples found: dedup [2021-02-12 04:48:46,993] multiqc [DEBUG ] No samples found: damageprofiler [2021-02-12 04:48:47,097] multiqc [DEBUG ] No samples found: biobambam2 [2021-02-12 04:48:47,114] multiqc [DEBUG ] No samples found: mtnucratio [2021-02-12 04:48:47,116] multiqc [DEBUG ] No samples found: picard [2021-02-12 04:48:47,136] multiqc [DEBUG ] No samples found: prokka [2021-02-12 04:48:47,148] multiqc [DEBUG ] No samples found: samblaster [2021-02-12 04:48:47,196] multiqc [DEBUG ] No samples found: samtools [2021-02-12 04:48:47,217] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-02-12 04:48:47,245] multiqc [DEBUG ] No samples found: bamtools [2021-02-12 04:48:47,261] multiqc [DEBUG ] No samples found: jellyfish [2021-02-12 04:48:47,295] multiqc [DEBUG ] No samples found: vcftools [2021-02-12 04:48:47,317] multiqc [DEBUG ] No samples found: longranger [2021-02-12 04:48:47,335] multiqc [DEBUG ] No samples found: stacks [2021-02-12 04:48:47,356] multiqc [DEBUG ] No samples found: varscan2 [2021-02-12 04:48:47,421] multiqc [DEBUG ] No samples found: bbmap [2021-02-12 04:48:47,439] multiqc [DEBUG ] No samples found: bismark [2021-02-12 04:48:47,460] multiqc [DEBUG ] No samples found: biscuit [2021-02-12 04:48:47,478] multiqc [DEBUG ] No samples found: hicexplorer [2021-02-12 04:48:47,500] multiqc [DEBUG ] No samples found: hicup [2021-02-12 04:48:47,524] multiqc [DEBUG ] No samples found: hicpro [2021-02-12 04:48:47,537] multiqc [DEBUG ] No samples found: salmon [2021-02-12 04:48:47,557] multiqc [DEBUG ] No samples found: kallisto [2021-02-12 04:48:47,581] multiqc [DEBUG ] No samples found: slamdunk [2021-02-12 04:48:47,615] multiqc [DEBUG ] No samples found: star [2021-02-12 04:48:47,635] multiqc [DEBUG ] No samples found: hisat2 [2021-02-12 04:48:47,654] multiqc [DEBUG ] No samples found: tophat [2021-02-12 04:48:47,671] multiqc [DEBUG ] No samples found: bowtie2 [2021-02-12 04:48:47,686] multiqc [DEBUG ] No samples found: bowtie1 [2021-02-12 04:48:47,709] multiqc [DEBUG ] No samples found: snpsplit [2021-02-12 04:48:47,728] multiqc [DEBUG ] No samples found: kat [2021-02-12 04:48:47,741] multiqc [DEBUG ] No samples found: leehom [2021-02-12 04:48:47,755] multiqc [DEBUG ] No samples found: adapterRemoval [2021-02-12 04:48:47,776] multiqc [DEBUG ] No samples found: clipandmerge [2021-02-12 04:48:47,798] multiqc [DEBUG ] No samples found: cutadapt [2021-02-12 04:48:47,811] multiqc [DEBUG ] No samples found: flexbar [2021-02-12 04:48:47,832] multiqc [DEBUG ] No samples found: kaiju [2021-02-12 04:48:47,851] multiqc [DEBUG ] No samples found: kraken [2021-02-12 04:48:47,872] multiqc [DEBUG ] No samples found: malt [2021-02-12 04:48:47,893] multiqc [DEBUG ] No samples found: trimmomatic [2021-02-12 04:48:47,916] multiqc [DEBUG ] No samples found: sickle [2021-02-12 04:48:47,936] multiqc [DEBUG ] No samples found: skewer [2021-02-12 04:48:47,952] multiqc [DEBUG ] No samples found: sortmerna [2021-02-12 04:48:47,966] multiqc [DEBUG ] No samples found: biobloomtools [2021-02-12 04:48:47,986] multiqc [DEBUG ] No samples found: fastq_screen [2021-02-12 04:48:48,004] multiqc [DEBUG ] No samples found: afterqc [2021-02-12 04:48:48,022] multiqc [DEBUG ] No samples found: fastp [2021-02-12 04:49:02,053] multiqc.modules.fastqc.fastqc [INFO ] Found 190 reports [2021-02-12 04:49:19,738] multiqc [DEBUG ] No samples found: pycoqc [2021-02-12 04:49:19,754] multiqc [DEBUG ] No samples found: minionqc [2021-02-12 04:49:19,770] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-02-12 04:49:19,788] multiqc [DEBUG ] No samples found: clusterflow [2021-02-12 04:49:19,804] multiqc [DEBUG ] No samples found: bcl2fastq [2021-02-12 04:49:19,819] multiqc [DEBUG ] No samples found: interop [2021-02-12 04:49:19,835] multiqc [DEBUG ] No samples found: ivar [2021-02-12 04:49:19,850] multiqc [DEBUG ] No samples found: flash [2021-02-12 04:49:19,864] multiqc [DEBUG ] No samples found: seqyclean [2021-02-12 04:49:19,864] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-02-12 04:49:19,864] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-02-12 04:49:19,864] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-02-12 04:49:19,864] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-02-12 04:49:20,079] multiqc [INFO ] Compressing plot data [2021-02-12 04:49:20,143] multiqc [INFO ] Report : multiqc_report.html [2021-02-12 04:49:20,143] multiqc [INFO ] Data : multiqc_data [2021-02-12 04:49:20,143] multiqc [DEBUG ] Moving data file from '/state/partition1/job-2644270/tmpcvu519y_/multiqc_data' to '/scratch/gencore/logs/html/HVG3CDRXX/merged/multiqc_data' [2021-02-12 04:49:20,365] multiqc [INFO ] MultiQC complete