FastQCFastQC Report
Sat 10 Nov 2018
HVCHNBGX7_n01_MT_30905.TR1_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVCHNBGX7_n01_MT_30905.TR1_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14653360
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCAATTA49150.037.754778
CTATTAG61800.036.3603978
TTCTGGC74700.028.140567
CGAGCTA42150.027.3436454
CAATTAG70350.026.480489
TTTGATC88150.024.2582512
TTGATTC82750.023.5636543
GATCCTG100950.023.4799295
TATTAGT102200.023.4765329
AGCAATT81150.021.9736377
CGATCTA14650.021.2758874
TCTGGCT109400.019.8773868
ATTCTGG104950.019.5460646
CTGGCTC213350.018.9922319
CGACCTA20350.018.1661384
TCGAGCT68600.017.2235163
TTGATCC130100.017.1048533
CGAGCAA110350.017.0787625
GAGCAAT106050.016.951046
TGGTTCG64900.016.7534753
Produced by FastQC (version 0.11.5)