FastQCFastQC Report
Sat 10 Nov 2018
HVCHNBGX7_n01_MT_30893.TR1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVCHNBGX7_n01_MT_30893.TR1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15805174
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATCTA36700.024.6883054
CTATTAG79450.022.9905768
CCGGGAA159250.021.7670291
CGAGCTA36150.020.4521624
CGGGAAC179300.019.6072652
GATCCTG121850.019.2737775
GGAACGT179100.019.18364
AACGTAT209000.018.797516
GGGAACG193200.018.0087183
TGCCGTG74050.016.543636145
CGAAATG165550.015.587991145
GAACGTA265500.015.3433114
TCGATCT57350.015.2932823
TATTAGT129200.014.7549079
GTATTCA276000.014.6018869
CGTATTC277050.014.5727088
TTGATCC152550.014.3022043
TTTGATC177300.014.1865352
GATCTAT71150.014.1607815
CTGGCTC159750.013.92966659
Produced by FastQC (version 0.11.5)