HVCHNBGX7_n01_MT_30783.TR3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVCHNBGX7_n01_MT_30783.TR3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11093977
Sequences flagged as poor quality	0
Sequence length	151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCGGGAACGTATTCACCGCAACATTCTGATTTGCGATTACTAGCGATTCC	45497	0.41010541125152866	No Hit
CGGGAACGTATTCACCGCAACATTCTGATTTGCGATTACTAGCGATTCCG	33891	0.30549008709861214	No Hit
CTGGGTTAGAACCTCAAAGACACCAGGGTGGTATTTCAAGGACGGCTCCA	17947	0.16177246446427643	No Hit
CTCACGAGCAATTAGTATGGGTTAGCTTCACGCGTTACCGCGCTTCCACA	15838	0.1427621492274592	No Hit
CCCCAGTCAAACTACCCACCAGACACTGTCCGAGACCACGTTTCGTAATC	13873	0.12504983559998367	No Hit
GCCCGGGAACGTATTCACCGCAACATTCTGATTTGCGATTACTAGCGATT	13544	0.12208426247864045	No Hit
CGGAAAGACCCCGTGAACCTTTACTATAGCTTGACACTGAACATTGAATT	13110	0.11817222985048555	No Hit
GCTACACACGTGCTACAATGGCGTATACAGAGGGAAGCGATAGTGCGAGC	12700	0.11447653082388759	No Hit
GCGGTGTACCCGCGGCTAGACGGAAAGACCCCGTGAACCTTTACTATAGC	11801	0.10637303466556672	No Hit
CACACGTGCTACAATGGCGTATACAGAGGGAAGCGATAGTGCGAGCTGGA	11649	0.10500292185570603	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGGGAA	22945	40.0122	1
GGTTAGA	8855	36.50828	4
TGTCCTA	5355	34.38122	5
GAGCAAT	8140	33.837975	6
AACGTAT	30155	33.147446	6
GCAATTA	9350	32.869827	8
GGGAACG	30240	32.167393	3
TCACGAG	7580	31.939081	2
ACGAGCA	8050	31.334915	4
CAATTAG	9895	31.205778	9
ACGTATT	33450	30.293833	7
GAACGTA	34145	29.550117	5
AGCAATT	9400	29.533445	7
GGAACGT	33355	29.228497	4
GTATTCA	35250	28.705658	9
TCTCGTT	5860	27.710007	145
CGAGCAA	9975	27.104603	5
CCATTGT	22575	26.0423	145
GTGTCCT	7335	25.594389	4
TATTCAC	32100	25.470957	9