HVC5JBGXG_n01_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVC5JBGXG_n01_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	36921090
Sequences flagged as poor quality	0
Sequence length	151
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGATCGATACAGGTATTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTC	1627300	4.407508012358248	No Hit
ACGATCGATAGGTAAGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGT	1583326	4.288405353146399	No Hit
GATCGATAACGCATTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCC	1464867	3.9675616294101825	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTATG	1437178	3.892566552070917	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCA	1340530	3.6307974656219524	No Hit
ATACTGTATCTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTAT	1164935	3.1552020809786496	No Hit
GATAGGTCGCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	695657	1.8841724336957548	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCACTAGGTCCACTATG	66209	0.17932569163044754	No Hit
AACAATGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTATGA	40042	0.10845291945606156	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGATCG	172280	143.5014	1
ATCGATT	145680	143.20973	1
TCGATTC	147790	141.90285	2
CGATTCC	148500	141.19942	3
GATTCCT	150220	139.6927	4
ACTGTAT	132255	139.15736	3
GATAACG	165545	139.00548	5
ATTCCTT	151175	138.88788	5
AACAATG	171800	138.71375	2
CGATAGG	180880	137.71715	6
CTGTATC	133690	137.58687	4
TCCTTGG	153485	137.18575	7
CCTTGGT	153595	137.07657	8
CGATACA	185260	137.0663	5
AACGCAT	168850	137.02838	8
ACGCATT	168860	136.977	9
TAACGCA	169360	136.65144	7
ATACAGG	185750	136.53711	7
ACAATGG	174295	136.30534	3
GATACAG	186315	136.25127	6