HVC5JBGXG_n01_0920_CD4_prestim.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVC5JBGXG_n01_0920_CD4_prestim.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17582360
Sequences flagged as poor quality	0
Sequence length	151
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCA	16472122	93.68550069501478	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCTCCAGTAGGTCCA	46595	0.2650099304075221	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACAGCCAGTAGGTCCA	33623	0.19123143878296203	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCACCAGTAGGTCCA	31650	0.18000996453263385	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCAC	26497	0.15070218104964295	No Hit
ATCGATTCCTTGGTTCTTGTCGAAAGGACGAAACACCGCCAGTAGGTCCA	24800	0.14105046194026286	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCAGTAGGTCCAC	23354	0.13282631000616527	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCCCCAGTAGGTCCA	20327	0.11561019112337594	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGATT	1748850	144.89725	1
CGATTCC	1748005	144.88225	3
TCGATTC	1749220	144.87947	2
ATTCCTT	1749950	144.86084	5
GATTCCT	1749200	144.83383	4
TTCCTTG	1749320	144.79694	6
TCCTTGG	1748735	144.72038	7
CCTTGGT	1748645	144.71664	8
CTTGGTT	1748780	144.61801	9
TCTGAAC	1692790	134.2985	145
CTGAACT	125300	121.691696	145
TCTGAAA	16550	116.91817	145
TCAGAAC	4705	79.66403	145
TGAACTC	20295	75.62462	145
CCTTAGT	2425	72.65086	8
TCTAACT	5425	67.22018	145
CTATTCC	3690	67.01459	3
TCTGAAT	5025	65.50149	145
ACTGAAC	3095	64.885925	145
TCGAACT	4620	64.18193	145