HVC5JBGXG_n01_0920_CD4_CD_low.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVC5JBGXG_n01_0920_CD4_CD_low.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23355546
Sequences flagged as poor quality	0
Sequence length	151
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATAGGTCGCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	21600508	92.4855621016096	No Hit
GATAGGTCGCATCTTGAGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	91348	0.39111909436842107	No Hit
GATAGGTCGCATCTTGTGGAAAGGACGAAACACCTCCAGTAGGTCCACTA	62029	0.2655857413909313	No Hit
GATAGGTCGCATCTTGTGGAAACGACGAAACACCGCCAGTAGGTCCACTA	48622	0.2081818168584027	No Hit
GATAGGTCGCATCTTGTGGAAAAGACGAAACACCGCCAGTAGGTCCACTA	47311	0.20256858906231523	No Hit
GATAGGTCGCATCTTGTGGAAAGGACAAAACACCGCCAGTAGGTCCACTA	44289	0.18962947815478173	No Hit
GATAGGTCGCATCTTGTGGAAAGGACGAAACACCACCAGTAGGTCCACTA	43829	0.18765992454211947	No Hit
GATAGGTCGCATCTTGTGGAAAGAACGAAACACCGCCAGTAGGTCCACTA	42145	0.18044964566446017	No Hit
GATAGGTCGCATCTTATGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	40558	0.1736546857007753	No Hit
GATAGGTCGCATCTTGTAGAAAGGACGAAACACCGCCAGTAGGTCCACTA	37763	0.16168750668470777	No Hit
GATAGGTCGCATCTTGTGAAAAGGACGAAACACCGCCAGTAGGTCCACTA	37135	0.15899863783959495	No Hit
GATAGGTCGCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCACTAT	33416	0.14307522504504927	No Hit
GATAGATCGCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	30982	0.13265371745109278	No Hit
GATAGGTCGCATCTTGTGGAAAGGACGAAACACCGCAGTAGGTCCACTAT	29176	0.12492107870224914	No Hit
GATAAGTCGCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	28068	0.1201770234787061	No Hit
GATAGGTCACATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	27557	0.11798910631333559	No Hit
AATAGGTCGCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA	25522	0.10927597239644923	No Hit
GATAGGTCGCATCTTGTGGAAAGGACGAAACACGCCAGTAGGTCCACTAT	23584	0.10097815739353727	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGTCGC	2316345	144.91505	4
CGCATCT	2320575	144.85704	8
GGTCGCA	2317355	144.84123	5
GATAGGT	2318610	144.80945	1
TAGGTCG	2317980	144.80031	3
GCATCTT	2320675	144.76802	9
TCGCATC	2322695	144.73323	7
ATAGGTC	2323035	144.71811	2
GTCGCAT	2321575	144.6526	6
ACGTCTG	2242410	131.60722	145
CGTCTGA	208630	110.859314	145
ACGACTG	6585	107.34451	145
ATCGCAT	4925	100.566284	6
ACGTCGA	6835	90.26556	145
ACGTCTA	8105	89.62841	145
ATCTCGT	12125	86.63984	145
AGATCGC	5915	83.85628	4
AAGTCGC	5435	81.65562	4
GATAAGT	5660	78.66499	1
ATAAGTC	5885	75.65692	2