FastQCFastQC Report
Thu 29 Aug 2024
HV5CNBGXV_n01_HW60_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV5CNBGXV_n01_HW60_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30991791
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCC1295190.4179138921012987No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCGGGGGT1255570.40512986164626624TruSeq Adapter, Index 15 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCGGGGTT942380.30407406916237917TruSeq Adapter, Index 15 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCGCGGTT377300.12174191546400141TruSeq Adapter, Index 15 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCGGGGGG355150.11459486158770238TruSeq Adapter, Index 15 (97% over 40bp)
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT318800.10286594924443057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)