FastQCFastQC Report
Sat 18 Jan 2020
HV3K5BGXC_n01_12_input_ABF2_60_K.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV3K5BGXC_n01_12_input_ABF2_60_K.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40481435
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCTG716900.08.26529770
CGTCTGA656500.08.16740670
TCCAGTC229750.07.997677370
ACTCCAG297950.07.858556770
GAACTCC411950.07.688898670
CACGTCT834100.07.578088870
CTGAACT516650.07.566879770
CAGTCAC183650.07.48965370
CTCCAGT278000.07.46569170
ACACGTC923750.07.44127170
TCTGAAC590350.07.410722370
GTCTGAA656900.07.389878370
AGTCACC164700.07.35262870
GCACACG1109900.07.24646670
CACACGT1036100.07.218765370
TGAACTC511750.07.13323570
CCAGTCA204350.06.71384870
AGCACAC1293400.06.583689770
GAGCACA1428250.06.38111970
AGAGCAC1587200.06.264691470
Produced by FastQC (version 0.11.5)