FastQCFastQC Report
Tue 7 Jan 2020
HV3K3BGXC_n01_36_NxW_C12-3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV3K3BGXC_n01_36_NxW_C12-3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12890925
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGCAT12750.012.9030011
CGCGGAG17700.010.48107051
CGCCCAT20650.010.3398161
CCGGCAT19900.09.6741471
CGCGGAT19450.09.5380441
TCGGGGG13300.09.4744472
GCCGAAT17000.09.4713521
TGCGGGG10450.09.37816333
CCCACAT29850.09.2637281
GGCGCGC6101.1265729E-79.18021338
CCCGCAT13150.09.05015851
CGGGAAT39350.08.9842051
CGGGGGC14250.08.8428173
GCGGGGT8151.7826096E-98.5896491
CGGGGAG13750.08.4006771
CGGGCCT7951.03846105E-88.3654541
CGCCAAT29500.08.3057541
GCGCGAT6805.9107333E-78.2359571
GTCGCAT15800.08.1968631
GCCGGAT29550.08.1732471
Produced by FastQC (version 0.11.5)