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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.9

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-03-04, 19:11 based on data in: /vast/gencore/GENEFLOW/work/c8/341f2e7a4a58e8921ecc6838692d74/merged

        Welcome! Not sure where to start?   Watch a tutorial video   (6:06)

        Demultiplexing Report


        Total Read Count: Total number of PF (Passing Filter) reads in this library.
        Portion: The proportion of reads that represent the individual library in the entire Library Pool.

        Showing 8/8 rows and 2/2 columns.
        LibraryTotal Read CountPortion (%)
        undetermined_library
        155754668
        7.3
        1-WTN
        252942150
        11.9
        2-WT
        256727590
        12.1
        3-chl
        365288388
        17.2
        4-WTN
        306383113
        14.4
        5-WT
        312568759
        14.7
        6-chlN
        261387042
        12.3
        7-chl
        209539914
        9.9

        Barcodes of Undetermined Reads


        We have determined the barcodes of your undetermined reads. Here are the top 20 barcodes. The full list is available here. If your libraries are dual indexed, the two indices are concatenated.

        Showing 20/20 rows and 2/2 columns.
        Barcode Sequence(s)CountFrequency (%)
        GGGGGGGGGGAGATCTCGGT
        79530186.0
        51.1
        GGGGGGGGGGAAAGGTAGTA
        2904575.0
        1.9
        TCCAAGGGTAAAAGGTAGTA
        2582911.0
        1.7
        GGGGGGGGGGGTAACAGGAA
        2103187.0
        1.4
        GGGGGGGGGGATAGATGCTC
        1989706.0
        1.3
        GGGGGGGGGGGAAGTTAGGG
        1504935.0
        1.0
        GGGGGGGGGGCTCCAAGTTC
        1296991.0
        0.8
        TCCCAGGGTAAAAGGTAGTA
        1248538.0
        0.8
        GGGGGGGGGGTTTAGACCAT
        1102123.0
        0.7
        AAGTGAGAGAGTAACAGGAA
        959198.0
        0.6
        GAAGTATACACTCCAAGTTC
        919787.0
        0.6
        CGAACCCAAATCCTCGAATC
        734921.0
        0.5
        CAAGTATACACTCCAAGTTC
        722118.0
        0.5
        AGTGGAGAGAGTAACAGGAA
        698781.0
        0.5
        CCCAAGGGTAAAAGGTAGTA
        663668.0
        0.4
        GGGGGGGGGGTCCTCGAATC
        644494.0
        0.4
        GTAGCCTGTAATAGATGCTC
        642385.0
        0.4
        CGTGACATGCGGGGGGGGGG
        635590.0
        0.4
        CTGACATGCATTTAGACCAT
        621482.0
        0.4
        TCCCAAGGGTGGGGGGGGGG
        564200.0
        0.4

        Run Statistics

        Showing 1/1 rows and 4/4 columns.
        Number of LanesTotal # of Single-End ReadsTotal # PF Reads% Undetermined% PhiX Aligned
        2.0
        2553348096
        2120591624
        7.3
        3.8

        MultiQC v1.9 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.