FastQCFastQC Report
Sat 27 Jul 2019
HV2L2BGXB_n01_MG_30908.TR3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV2L2BGXB_n01_MG_30908.TR3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18955539
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCCGC109500.017.214502145
ATGCCGG124700.016.04641145
TATACTG223450.016.0298255
TACACTG152950.015.0750885
CTACACT111900.014.3848424
GTATAGA138400.014.0402241
TACACCG37350.013.7831965
CTATACT134350.013.5462234
GTATTAG129550.013.5441981
GTGTAGG86400.013.4270791
TACACAG182550.013.3059275
GTCTAGA103250.013.2021041
TCTATAC138650.013.1782313
GTATACG31900.012.9556591
CTCCGAC46500.012.940778145
TATACAG176700.012.6795575
ATACTGT284950.012.5192926
GTATAGG73800.012.477361
GTACTAG56250.012.2454971
CTTACAC112150.012.2190933
Produced by FastQC (version 0.11.5)