FastQCFastQC Report
Sat 27 Jul 2019
HV2L2BGXB_n01_MG_30904.TR1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV2L2BGXB_n01_MG_30904.TR1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19305130
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACCG48750.016.360165
TATACTG164100.015.3758875
TACACCG76800.014.6332225
TCTCCGC151600.014.346816145
CTACACT99450.013.99788954
TACACTG116750.013.9110725
CTATACT127650.013.8591034
GTATAGA132950.013.6881141
TACACAG144650.013.5837715
GTATAAG124900.012.88690951
TATACAG161550.012.8808475
CCTACAC96450.012.8544763
ATGCCGG191200.012.854207145
TCTACAC124100.012.7947813
GTGTAGG94700.012.7091461
GTATAGG87050.012.5766931
GTCCTAG58150.012.4683361
GTATTAG140200.012.3597071
TAGACAG163150.012.3101175
TCTATAC135550.012.1953943
Produced by FastQC (version 0.11.5)