FastQCFastQC Report
Sat 27 Jul 2019
HV2L2BGXB_n01_MG_30903.TR2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV2L2BGXB_n01_MG_30903.TR2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19627760
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGG133350.018.430656145
TCTCCGC120550.017.3806145
TATACTG236850.016.8368595
TACACTG164700.016.068345
CTCCGAC41350.015.253794145
CTATACT138700.015.0029294
CGTCTTG91750.014.381343145
TGCCGTG101450.014.221164145
TACACCG25550.013.905195
CTACACT117850.013.8427874
GTATTAG132750.013.5996841
TATACCG21350.013.5841935
TACACAG194500.013.4946215
CCTACAC86600.013.3957893
GTATAGA140100.013.3002251
CACGAGC70350.013.294125145
TCTATAC138300.013.2636963
TCTACAC123100.013.1933823
GTGTAGA122700.013.1181441
GTGTAAG118300.013.11574651
Produced by FastQC (version 0.11.5)