FastQCFastQC Report
Fri 31 Jan 2020
HV2J2BGXC_n01_1736_tninsertions2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV2J2BGXC_n01_1736_tninsertions2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9031540
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCATAA2702550.0142.133037
GGTCATA586150.0140.665276
TGTCATA749550.0140.496676
GTCATAA2159150.0138.40497
GTTCATA698700.0137.969646
TTTCATA1021250.0137.753346
AGTCATA480450.0137.087346
TATCATA700850.0136.89476
ATTCATA641100.0135.992836
TCATAAG8299600.0135.093298
CTTCATA447200.0134.586526
CCTCATA216700.0132.348196
GATCATA437700.0132.323356
TCTCATA509050.0130.353766
GGGGTCA48450.0130.180544
GCTCATA333700.0129.982046
CGGTCAT105750.0129.774935
TAATAAG591450.0129.364418
TCAGAAG316550.0128.709268
GTGTCAT205050.0127.528425
Produced by FastQC (version 0.11.5)