FastQCFastQC Report
Fri 31 Jan 2020
HV2J2BGXC_n01_1657_2_tninsertions2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHV2J2BGXC_n01_1657_2_tninsertions2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13727402
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCATA884600.0141.208246
TGTCATA1148700.0141.100526
TTTCATA1487950.0140.52186
GTTCATA1050550.0140.495186
TTCATAA4148100.0139.576117
TATCATA1075750.0136.637916
GTGTCAT306600.0133.38415
CGGTCAT156100.0133.244035
TTGTCAT411550.0132.663125
ATTCATA992000.0132.658316
GTTTCAT386100.0132.18835
AGTCATA779450.0131.842836
AGGTCAT231150.0131.601765
CGTTCAT198700.0131.348395
GGGTCAT252300.0130.741745
GGGGTCA70100.0129.481584
TGTTCAT396850.0129.466135
TGGTCAT316200.0129.449135
GGTTCAT279000.0129.351325
ATGTCAT313150.0129.205115
Produced by FastQC (version 0.11.5)