FastQCFastQC Report
Wed 15 Dec 2021
HTWTHBGXK_n01_JK57.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTWTHBGXK_n01_JK57.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11388407
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC116750.10251653282149119TruSeq Adapter, Index 4 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)