FastQCFastQC Report
Wed 2 Dec 2020
HTW7MBGXG_n01_ps-bZIP53..ph-bZIP25_Col..h-B_q2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTW7MBGXG_n01_ps-bZIP53..ph-bZIP25_Col..h-B_q2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences914729
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGACGCG252.3910741E-455.99859652
ATCGGGG1950.030.5120639
TCGGGGG2150.027.67372740
AATCGGG2750.022.90851838
CGGGGGG2056.002665E-1122.19456741
CACTCCG3000.022.16611328
ACTCCGG3000.022.16611329
CCCCAGC850.003790730820.58771952
TCCGGAG4000.017.49956131
GTCACTC4100.017.07274426
GAATCGG3551.8189894E-1216.76014537
CAGTCAC4700.016.38256824
CCAGTCA4400.015.90869323
CTCCAGT4600.015.21701121
CTCCGGA4450.014.94344630
TCCAGTC4750.014.73647422
TCACTCC5000.014.69963327
CGGAGAA5550.013.87352833
ACTCCAG4901.8189894E-1213.57108920
CCGGAGA5250.013.33332
Produced by FastQC (version 0.11.5)