FastQCFastQC Report
Wed 2 Dec 2020
HTW7MBGXG_n01_ps-bZIP53..ph-bZIP10_Col..h-B_q_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTW7MBGXG_n01_ps-bZIP53..ph-bZIP10_Col..h-B_q_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences670387
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCGCC400.002419069934.9989632
TCGGGGG1701.4006218E-1024.70514740
CGGGGGG1802.8558134E-1023.33263844
ACTCCGG2700.023.33263829
ATCGGGG1802.8558134E-1023.33263842
CACTCCG2750.022.90840728
CTCCGGA3000.019.83274330
TCCGGAG2900.019.30976931
AATCGGG2254.620233E-918.6661141
CCTGGGG950.00720878818.42050268
GCACCTT1000.0096837917.50078225
TTCCGCC1200.001340546117.4994777
CCGGAGA3501.8189894E-1115.99952332
GTCACTC3753.6379788E-1215.86737726
GAATCGG2906.208211E-915.68918737
CCAGTCA3957.2759576E-1215.0650923
TCACTCC4251.8189894E-1214.82308727
CAGTCAC4051.0913936E-1114.69201724
CGAAAGT1500.005927135714.0016726
AGTCACT4505.456968E-1214.000627525
Produced by FastQC (version 0.11.5)