FastQCFastQC Report
Sat 16 Feb 2019
HTTGHBGX9_n01_ba155.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTTGHBGX9_n01_ba155.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412710196
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGGCGT1001800.017.5247271
GCGCGAT786950.017.0879151
CTGCGGA941300.017.0493581
TGCGTGG1132100.017.0047441
GGGACCT853000.016.9517141
CCGGTAG1155650.016.8079871
CAATGGA1130550.016.7394858
TGACTAG1195650.016.7259831
ATGCGAT877150.016.69031
AGGCGAC492500.016.6710458
CGGACTG981250.016.6631371
GAATGAA1160550.016.6232281
GTAACTG1371450.016.5997491
ATGGGAG1097800.016.5800461
GGGAGAT979900.016.5758251
CCGGGAT748400.016.5524271
ATAGACC1125400.016.479241
GACCAAT1704500.016.4731
GACTAAC954900.016.3675381
ACTGATG918200.016.3363821
Produced by FastQC (version 0.11.5)