FastQCFastQC Report
Tue 29 Jun 2021
HTLWKAFX2_n01_ChIP-zmm16-GR.rep6input.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTLWKAFX2_n01_ChIP-zmm16-GR.rep6input.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12792342
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCAACAATCTCGTATGC148380.11599127040224536TruSeq Adapter, Index 2 (97% over 36bp)
CTCCTTTTTTTTTGCAAATAGCTTCACCTATATAATACTTCATCCATTTT135080.10559442516468057No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)