[2019-04-01 23:41:37,577] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml [2019-04-01 23:41:37,577] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml [2019-04-01 23:41:37,577] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2019-04-01 23:41:37,579] multiqc [DEBUG ] Loading config settings from: /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml [2019-04-01 23:41:37,579] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2019-04-01 23:41:37,579] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HTKZQN1rc/2 [2019-04-01 23:41:37,579] multiqc [DEBUG ] Could not connect to multiqc.info for version check [2019-04-01 23:41:37,579] multiqc [INFO ] This is MultiQC v1.0.dev0 [2019-04-01 23:41:37,579] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HTKZQN1rc/2 [2019-04-01 23:41:37,579] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/HTKZQN1rc/2 [2019-04-01 23:41:37,579] multiqc [INFO ] Template : default [2019-04-01 23:41:37,579] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports. [2019-04-01 23:41:37,579] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/HTKZQN1rc/2' [2019-04-01 23:41:37,579] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow [2019-04-01 23:41:37,579] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-495008/tmpU3JJUn [2019-04-01 23:41:37,596] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /beegfs/mk5636/logs/html/HTKZQN1rc/2/multiqc_data [2019-04-01 23:41:37,864] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:37,880] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2019-04-01 23:41:37,918] multiqc.modules.custom_content.custom_content [INFO ] demux_report-2: Found 44 samples (table) [2019-04-01 23:41:37,920] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2019-04-01 23:41:37,947] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:37,956] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:37,960] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2019-04-01 23:41:37,993] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:38,692] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:38,704] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:39,516] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:39,525] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:39,540] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:39,733] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:39,933] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:40,128] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:40,324] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:40,333] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:42,378] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:42,390] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:42,548] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:43,138] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:43,330] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:43,364] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:43,373] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:43,387] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:43,575] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:44,716] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. [2019-04-01 23:41:44,731] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:44,739] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:44,895] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:45,048] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:45,202] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:45,358] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:45,513] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:45,522] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:45,532] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a160_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,532] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,539] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a236_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,539] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,540] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a297_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,540] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,547] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a47_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,547] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,548] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a25_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,548] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,561] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a300_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,561] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,568] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a351_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,568] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,581] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a47_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,581] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,601] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a331_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,601] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,602] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a70_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,602] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,603] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a258_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,603] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,604] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a309_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,604] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,605] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a330_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,605] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,606] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a26_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,606] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,607] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a15_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,607] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,608] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a309_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,608] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,645] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a236_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,645] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,646] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a351_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,646] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,647] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a179_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,647] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,648] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a15_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,648] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,682] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a45_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,682] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,683] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a263_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,684] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,691] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a317_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,691] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,717] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a25_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,717] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,718] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a297_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,718] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,719] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a258_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,719] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,720] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a263_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,720] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,721] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a295_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,721] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,722] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a4_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,722] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,741] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a293_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,742] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,743] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a262_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,743] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,744] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a317_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,744] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,763] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a291_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,763] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,770] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a248_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,770] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,771] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a293_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,771] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,791] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a262_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,791] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,799] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a331_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,799] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,800] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a45_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,800] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,841] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a295_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,841] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,856] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a300_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,856] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,857] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a26_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,857] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,871] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a291_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,872] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,873] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a330_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,873] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,874] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a248_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,874] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,875] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a179_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,875] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,876] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a313_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,876] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,877] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a313_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,877] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,887] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n01_a4_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,887] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,927] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a160_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,927] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,928] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTKZQN1rc_l02_n02_a70_fastqc.zip' - Bad zip file [2019-04-01 23:41:45,929] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2019-04-01 23:41:45,929] multiqc.modules.fastqc.fastqc [INFO ] Found 38 reports [2019-04-01 23:41:47,511] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HTKZQN1rc/2',) [2019-04-01 23:41:47,554] multiqc [WARNING] Deleting : multiqc_report.html (-f was specified) [2019-04-01 23:41:47,555] multiqc [INFO ] Report : multiqc_report.html [2019-04-01 23:41:47,555] multiqc [WARNING] Deleting : multiqc_data (-f was specified) [2019-04-01 23:41:47,560] multiqc [INFO ] Data : multiqc_data [2019-04-01 23:41:47,560] multiqc [DEBUG ] Moving data file from '/state/partition1/job-495008/tmpU3JJUn/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/HTKZQN1rc/2/multiqc_data' [2019-04-01 23:41:47,562] multiqc [DEBUG ] Moving data file from '/state/partition1/job-495008/tmpU3JJUn/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/HTKZQN1rc/2/multiqc_data' [2019-04-01 23:41:47,564] multiqc [DEBUG ] Moving data file from '/state/partition1/job-495008/tmpU3JJUn/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/HTKZQN1rc/2/multiqc_data' [2019-04-01 23:41:47,667] multiqc [INFO ] MultiQC complete