HTKZQN1rc_l01_n01_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HTKZQN1rc_l01_n01_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12557126
Sequences flagged as poor quality	0
Sequence length	101
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTACGTCTACTACTCTACTGTTCCTCTCGATATTCTTCCCTCATAGACT	22014	0.17531081554808003	No Hit
CGACGCGTGTAGCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAC	15298	0.1218272397680807	TruSeq Adapter, Index 5 (100% over 35bp)
CGTATGAGTACGATATATACTGAAACGAAAACGTTCTAATCTCTTGTTCC	15221	0.12121404213034097	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTGTAT	68720	94.29162	1
AGTACGA	104195	92.17923	7
GAGTACG	104425	91.99439	6
GTACGAT	104675	91.602615	8
CGACTAT	32120	91.40249	1
CGTGTCG	24545	91.327896	1
GTGTCGC	24305	91.26199	2
CGCGCGT	24945	90.976944	4
CGTATAG	64730	90.76206	1
TCGCGCG	25225	90.607285	3
TGTCGCG	24485	90.397095	3
CGCGTCA	25100	90.17091	6
GTATGAG	107570	90.04922	2
GCGCGTC	25250	89.91742	5
TATACTC	71585	89.81432	7
GTGTATA	72090	89.78954	2
ATGAGTA	107465	89.59356	4
GCGCACT	24525	89.592964	7
CGTAGTA	15430	89.42573	1
CGCGCAC	24620	89.4209	6