FastQCFastQC Report
Wed 3 Apr 2019
HTKZQN1_l02_n02_BC294CG_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTKZQN1_l02_n02_BC294CG_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111
Sequences flagged as poor quality0
Sequence length101
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGTCGCACGCGTACGACGCAAAAAGGGAAAGTTTTATTATTTGGACAG10.9009009009009009No Hit
CGAATCGCACGCGTACGACGCAACAGGGGCAAGATCCCAATGATATTTGC10.9009009009009009No Hit
CGAGTGGCACGCGTACGACGCAAAACAGGGAAAACAAAAGCAAAAAAAAT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACTCCAGTGAATGAAAAGATGTGAATGTG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGCAGGGGAAAACAAAAGCAACAAAAATG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACTCCCACGGTCGATTCGAGCCATGCCAG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACCCAGAATGAAGTGGATGATTGCTCAGT10.9009009009009009No Hit
CGTGTCGCACGCGTACGACGCAGATGGATGGTGAATGCCCCATAGCACGA10.9009009009009009No Hit
CTAGTCGCACGCGTACGACGCACTTCCATTCGCTTCTGGTAGGCCTGCAA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCGTGATCAGTGAAACAAGGTTGTTTTTTAT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGGAACGAGAAATACACCCAGACCAAATG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGCAGGGACAAAGAACATGAAGAGAACAA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAACGAGAGGATCACTTGAATCGCTGCATC10.9009009009009009No Hit
CGAGTCGCACGCGTACGAAGCAGGGGGGCAAAAAAAAAAAGGAGCCCAAA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAATTAGACTGTTGAATACAGATTTTGCCA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGTGCTCTCTTCGTCAAGGGTGTAGTCCG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACTTCCCCCAAGATCGAAGGTTCCAGGTT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAATACGCGTGATCAGTAGAAACAAGGCCG10.9009009009009009No Hit
AGAGTCGCACGCGAACGACGCACGGCCCCGCTAGTCCAGATTGTGTTCTC10.9009009009009009No Hit
CGAGGCGCACGCGTACGAGGCAGGGGGGCAAAAAAATAATGGAAAACAAC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAACGGGGGGAATCAATAATTGTAGAATCT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACCCCCCACGCGTGATCAGTAGAAACAAG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGCGCCACGCGTGATCAGTAGAAACAAG10.9009009009009009No Hit
CGTGTCGCACGCGTACGACGCAAGTGCACCAGTTGAATAGCTTAGTGACA10.9009009009009009No Hit
CGAATCGCACGCGTACGACGCAAGAGAAGAACCCCGCACTCAGAATGAAG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAAGCATCAATGAACTGAGCAATCTTGCAA10.9009009009009009No Hit
CGAGTCGCACGGGTACGACGCACCCAACCCACAGTGTCACTGTTTACACC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAAAAGCCCCAAGATCGAAGGTTCCAGGTT10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCAGGGGGGGCAAGAGAAGAACCCCGCACTC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACTTCGCGACGCGTGATCAGTAGAAACAA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGCGAGGCCAAGGGTGTTGCCTCTTCCTT10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCACAAAGGGAAAGATAGTCAAATCAGTCGA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAAACGAGAAAGCTCTTATCTCTTGTTCTA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCGCAAGCGGAAAAAGGTCGAGAAAGTTTAG10.9009009009009009No Hit
CGAGTCGCACCCGTACGGCGCAAAGAGAGGGACCAAGAAGGGAGAATGAA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGCGGGGGAAATTGCCCGCTAATTTCACG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGAATACTCATTACCAACACTACGTCCCCTTG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAATCCCACAAAAGGATATGCTGCTCCCGC10.9009009009009009No Hit
CGAGTCGCACGCGTACGCCGCAGAGCGGAAAAGACAATGAAAGAATATGG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACCGGGAGGGGGGGAGTGGGGGTTGGCCG10.9009009009009009No Hit
TGAGTCGCACGCGTACGACGCACGTATAGAGGGCCTATTATCTTTTGCCT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGGCGCAAAAGCAGCTTCTGTGGGCACT10.9009009009009009No Hit
CCAGTCGCACGCGTACGACGCAAGCAGGCCAAATATATTCAATATGGAGA10.9009009009009009No Hit
CGAGTCGCACGCGGCCGACGCAGGGGAGGAAAATAACCTGCGACGCAAAT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAAGAACAGAAATTTGGAGAAACAAGGTTG10.9009009009009009No Hit
TGAGTCGCACGCGTACGACGCACGGAAGAGAAGGTAATGGTGAAATTTCT10.9009009009009009No Hit
TGAGTCGCACGCGTACGACGCACGGACGAGAGGATCACTTGAATCGCTGC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACACTCTACGCGTGATCAGTAGAAACAAG10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCAAGAATCAAAACTAGGCTTTTCACTATAA10.9009009009009009No Hit
CCAGTCGCACGCGTACGACGCACGGCCCGCAAATTTTCAAGAAGGTCATC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACACAAGCAGGCAGGCAGGATTTATGTGC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAATCCACTAATCAGGCATGAAAACAGAAT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGGGGGCCAAAGAGGTGTCACTAAGCTAT10.9009009009009009No Hit
TGAGTCGCACGCGTACGACGCACAAGGACAAAGAACATGAAGAGAACAAG10.9009009009009009No Hit
CGAGTAGCACGCGTACGACGCAATGGACGGAAATTTGAGGAAATAAGGTG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGGATACGCGTGATCAGTAGAAACAAGG10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCACAGAGGGGGAAAGGGGGGGGGGGGGAGG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGGGGCAGCAAAAGCAGGTGAAAACAAAA10.9009009009009009No Hit
CGACTCGCACGCGTACGACGCAGGAGGGACAAAAACATAATGGACTCCAA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGCACCACAAAAGGATATGCTGCTCCCGC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGAACACAATTCCTAAAATTCCCTTAGTC10.9009009009009009No Hit
GGAGTCGCACGCGTACGACGCCTATGAGTCCCAATAGTTCTCATTGCATG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACTCCCATTCGCTTCTGGTAGGCCGGCAA10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCATGGGCAAGAATCAAAACTAGGCTTTTCA10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCACCGGCCACGCGTGATCAGTAGAAACAAG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGAAGAAACAAGGCCGTTTTTAAACAATT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGGAAAGAGGGCCTATTATCTTTTGCCT10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCACACCCACCAAAACTGAAAGATGAGCTAA10.9009009009009009No Hit
CAAGTCGCACGCGTACGACTCACGATCGGAAAAGAAATCTGGAGGGGACG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAACGTGGACGCGTGATCAGTAGAAACAAG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACTCCGAATGAACTGTACTTGTTGTTGGG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACCGCCTGGCCAAGACCAACCCACAGTGT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGCGAAGAAAACCCCTCAAGTTGTGGAGA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAACGAGAAGAACCCCGCACTCAGAATGAC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCCGGCGGCGGCAATGGGGTTTGGCTGGGGG10.9009009009009009No Hit
CGAGTCGCCCGCGGACGACGCATGGTGTTCGGGGCCCCAATCCCCTTTAG10.9009009009009009No Hit
CGACTCGCACGCGTACGACGCACCGCGACTGGTATTCGAGAAATTTTTCC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGGGACCGGAATTTGAGGAAATAAGGTGG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACCCGTCTATTCTTCTATATATGGGTCCT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGGAGGAAGCAAAATTAAACAGAGAAGAA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGAATTGGGATCAGGCACTCCTTCCGTAGAAG10.9009009009009009No Hit
TGAGTCGCACGCGTACGACGCAGGGGGGCCAAGGAGGTGTCACTAAGCTA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAAGGAGGGGAAGACAAGAGATATGGCCCA10.9009009009009009No Hit
CGAGTCGCACGCGAACGACGCATGGAGGTTGCTAATCAGACTAGGCAGAG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAAGTAGCAGACTCCACCCCAGATGTGCCT10.9009009009009009No Hit
CGAATCGCACGCGTACGACGCACTTGGGTAAATCAGACATATGTTAACAT10.9009009009009009No Hit
CGAGTCGCACGCGGACGACGCGCCCCGGGTGGTCAGTAGAAACAAGGCCG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGCTGGCTGGATCGCGTGATCAGTAGAGA10.9009009009009009No Hit
TGAGTCGCACGCGTACGACGCAGCACGCGTGATCAGTAGAAACAAGGCCG10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCAGAGCCCCTAATTATCACTATGAGGAATG10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCACAGGGAGCGATAGTTGGAGAAACAATAT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGCAGAATGAAGTGGATGATGGCAATGA10.9009009009009009No Hit
TGAGTCGCACGCGTACGACGCACCACCATGTCAAGCTTTCAGGTAGACTG10.9009009009009009No Hit
CGAGTCGCACGCGTACGATGCAGGCGACCAAAAGAATTAGGATGGAGATA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGGGCCCCAATTATTGCCTCAGCAATTGA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGAGAAGGCAAAGGCCATGTACCATCTGC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCATGGAGCACCGTCTGGCCAAGACCAACCC10.9009009009009009No Hit
CGAGTCGCACGCGGACGACGCCTGGGGCGCAAAAAGGACTCTCGATTGAA10.9009009009009009No Hit
CGAGTCGCATGCGTACGACGCACAGCGCAGAAATGAAAAGTGGCGAGAGC10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGCCCCTTGGAATGCAGAACCTTCTTCT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGGACGCCAAGACTCGGCCTCAATCATG10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACCACACACAAGCAGGCAGGCAGGATTTA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAGAGCCAGGAACATTCGAGGATTTTGATT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCAAGGAGGGGAAAACAACTGGAAGGGGGCT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACTAGAAACAAGGCCGTTTTTAAACAATT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCACGCGCCCCAAGATCGAAGGTTCCAGGTT10.9009009009009009No Hit
CGAGTCGCACGAGTACTACGCACACACGCCAAGAACAACAAACAGTGGCA10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCTAGTCCAGATTGTGTTCTCTTTGGGTCGC10.9009009009009009No Hit
CGAGTCGCACGCGGACGACGCAACCGGGAAAAATAATGAATTTAAATTGT10.9009009009009009No Hit
CGAGTCGCACGCGTACGACGCATACGCGGGATCAGCAAAAGCAGGCCAAA10.9009009009009009No Hit
CAAGTCGCACGCGTACGACGCAGATGACTGATTAGCAACCTCCATGGCCT10.9009009009009009No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCAC100.094.999994
CACGCGT100.094.999998
GCACGCG100.094.999997
AGTCGCA100.094.999993
TCGCACG100.094.999995
CGCACGC100.094.999996
ACGCGTA100.094.999999