FastQCFastQC Report
Fri 15 Feb 2019
HTJYVBGX9_n02_Sample_44.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJYVBGX9_n02_Sample_44.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18142969
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACGC42050.015.690728145
GTATATA336850.014.8324011
TATACTG174800.014.638915
GTCCTAG87700.013.9738441
GTATAGG71650.013.8654231
GTCCTAA95550.012.9017031
CTATACT128900.012.6530934
CCTATAC72600.012.4806413
GTATAGA127150.012.4327991
GCCGACC21600.012.41983145
GTATAAG120250.012.362251
CTAATAC132150.012.12243
GTATTAG126350.012.1097731
GTATTAT213650.012.0490891
GTCCTAT85800.011.9168251
GTCCTAC60300.011.9054741
CCTAGAC98850.011.8796013
TCTATAC125700.011.8217593
GTGTATA220550.011.573491
GTATTAA193150.011.4882921
Produced by FastQC (version 0.11.5)