FastQCFastQC Report
Fri 15 Feb 2019
HTJYVBGX9_n02_Sample_201.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJYVBGX9_n02_Sample_201.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37328
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACTAG100.0070584007145.036246
GACAGGG100.0070584007145.036247
CAGTAAG100.0070584007145.036242
TATACTG100.0070584007145.036245
ATACAAC300.001919190372.518123
GTCCAGG501.9826606E-458.0144961
TGCCATG400.005999500454.3885885
AATGAAG450.00955755848.3454175
AAGGGGG3451.5609075E-610.523999145
GGGGGGG75200.09.946018145
TGGGGGG1800.001387398.068399135-139
AGGGGGG3603.0479423E-66.8489337125-129
AAAGGGG3507.085229E-45.8014493125-129
TCATTAA8357.6397555E-115.565746135-139
AAAAAAA28550.05.2903824140-144
CATTAAA8251.8462742E-95.281134135-139
CCGTATC8902.4556357E-95.05318130-134
Produced by FastQC (version 0.11.5)