FastQCFastQC Report
Fri 15 Feb 2019
HTJYVBGX9_n01_Sample_72.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJYVBGX9_n01_Sample_72.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22857208
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTATAC91900.014.8316533
GTATATA445200.014.2857111
TATACTG245350.014.1545075
CTATACT166750.014.1306724
ACGGACG15000.014.020613145
GTATAGA164400.013.7187961
TCTATAC151800.013.2298593
GTATTAG165600.013.2252541
TATACAG217450.012.5030835
GTATTAT276750.012.4469631
GTCCTAG112400.012.000631
TACACTG217500.011.8335325
GTCCTAT107900.011.76180651
GTGCTAG128200.011.70953751
GTATAGG91150.011.615921
ATAATAC261850.011.5459773
ATACTGT321350.011.3258486
CACGAGC51250.011.32026145
GTATTAA233850.011.3191271
GTGTATA285600.011.1217561
Produced by FastQC (version 0.11.5)