FastQCFastQC Report
Fri 15 Feb 2019
HTJYVBGX9_n01_Sample_44.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJYVBGX9_n01_Sample_44.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18142969
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTATAC72200.014.76118853
TATACTG173250.014.0188635
GTATATA330500.013.7565741
GTCCTAG90900.013.0826031
CTATACT126350.012.4516154
TCTATAC121800.012.38104253
CCTACAC91200.012.3219113
TATACAG166550.012.2756835
GTATAGA122150.012.1695521
GTACTAG62350.011.9788471
GCTAGAC97200.011.8596543
GTGCTAG103850.011.8003371
CTTACAC128250.011.6453093
GTATAAG116650.011.5622521
TGCGTTC60250.011.5552635145
GTCCTAC61000.011.5307121
GTATTAG126450.011.52634051
GTATTAA187350.011.4952121
CTATACC80850.011.478134
GTATTAT209100.011.270511
Produced by FastQC (version 0.11.5)