FastQCFastQC Report
Fri 15 Feb 2019
HTJYVBGX9_n01_Sample_21.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJYVBGX9_n01_Sample_21.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103181
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATAC451.18613294E-464.473761
CCATACG451.188985E-464.4425059
GTTAATA350.003551036462.1711241
GGATCCG350.003557868562.1409873
CCTAATG350.003557868562.1409872
TGGATCC350.003557868562.1409872
GGAGAGA400.006036292354.3733636
TTTACAC400.006036292354.3733633
TAGGTGA400.006036292354.3733635
GTATAAT450.00959756148.355321
GATTAGG450.00959756148.355321
TCAGGCC450.00961597548.331883
GTTAAGT700.001052391641.4273265
TGTTAAG700.001052391641.4273264
TAATGGT700.001052391641.4273264
GGAGTGC907.437118E-540.2765668
TAAGTGT750.001477438538.6655047
TTAAGTG750.001477438538.6655046
GCACCAT1051.84257E-434.522776
ACTGCGG850.002731057134.116628
Produced by FastQC (version 0.11.5)