FastQCFastQC Report
Fri 15 Feb 2019
HTJYVBGX9_n01_Sample_205.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJYVBGX9_n01_Sample_205.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17196733
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGACG2650.00205576516.41966145
CCTATAC69000.014.5000263
CCTACAC85600.013.7208193
CTATACT119300.013.3088324
TATACTG174900.013.2232175
GTATACG18350.013.0407871
GTATATA322500.013.0189141
GTCCTAA90400.012.67402651
TATACAG154050.012.4244875
GTATAGA114300.012.1175011
GTCGTCG9007.727067E-912.086694145
GCTAGAC96650.012.0771053
GTATTAG121300.011.8964721
GTCCTAC57650.011.82372951
GTATAGG66500.011.776821
GTCCTAT78750.011.6023481
TTATACT187200.011.5798154
GTGTATA208650.011.5036471
GTATTAT204200.011.4347331
TCTATAC112550.011.3372043
Produced by FastQC (version 0.11.5)