FastQCFastQC Report
Mon 1 Mar 2021
HTJTLBGXH_n02_dpr203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJTLBGXH_n02_dpr203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1330639
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTGGCTTTGACATTCGTCTGGAAGTAGACGGTGGCGTGAAGGTGAAC97960.7361876511961546No Hit
GGCTGGGAGAGGAGCCAATTCAGGGAGGTTGCTAGGGCTTTTGAGCTGCC91090.6845583212276207No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59540.4474541930606273No Hit
CGTATATCCTCTGTGCGTTAGTGGTATTGTTGGCAAGCGCCTGTTTTGAA59040.4436965999042565No Hit
GCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGG46970.35298830110946694No Hit
GTCCACCTCTAGCAGGAAGACAAGGCATCAAATGAGAGATGGGGCTGCCA29470.22147254063649122No Hit
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG28870.21696342884884628No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC21140.1588710386513547No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGTAGCTTGTGTAGATC15200.11423083195367038No Hit
GCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCACCAT13510.10153016708513729No Hit
GAGTATAGAACCTAAAGAAATGCAATTACAAAGAGACATGGACAACAGGG13420.10085380031699055No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)