FastQCFastQC Report
Mon 1 Mar 2021
HTJTLBGXH_n01_dpr196.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTJTLBGXH_n01_dpr196.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences687464
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTACACGGTGTCTCTTATACACATCTCCGAGCCCACGAGACACCGTG17970.26139550580103105No Hit
AGGGATAACAGCGCAATCCTATTTAAGAGTTCATATCGACAATTAGGGTT13890.202046943549044No Hit
GGCTAGGACACCTCCTAGTTTATTGGGGATTGAGCGTAGAATGGCGTATG9290.1351343488531763No Hit
GTGTTAGGCTGGTTAAACTAATTAGAAAACTATATGAGGTTACGTTTGTT8150.11855166234159172No Hit
GGTGTACAGTGGGAAGTTGATGTGTTTAATTAGGTTTGATATTGAAATTA7890.11476964611965136No Hit
ATACTATGCCTTCCAGGCATAGTAATGTGGATATTAGGTGAGAGCGAAAT7750.11273317584629887No Hit
CGTCTAGACTGTGTGCTGTCCTTTCATGCCTTGACGGCTATGTTGATGAA7620.11084216773532868No Hit
GCCTATATCTACATGATAATACATAATGACCCACCAAACTCATGCATATC7530.10953300827388779No Hit
CTGTCTACACGGTGTCTCTTATACACATCTCCGAGCCCACGAGACACCGT7440.10822384881244691No Hit
CTGTAGGACTAGCCCTACTAGTAAAAGTTTCAAACACGTACGGAACAGAT7440.10822384881244691No Hit
GCCCTACACCAGTTTCAGCACTACTACACTCAAGTACAATAGTAGTTGCA7290.10604191637671209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)