HTHTVAFXY_n02_Columbia-1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HTHTVAFXY_n02_Columbia-1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28077370
Sequences flagged as poor quality	0
Sequence length	129
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATT	99007	0.3526220582625794	No Hit
CTCTTATATTTATTTCTACATCTAGGATCCGATTTGTATCATTATCATTG	60444	0.21527657326879265	No Hit
GGCCTAAGTTCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGT	49010	0.17455338587624125	No Hit
CTTATATTTATTTCTACATCTAGGATCCGATTTGTATCATTATCATTGAT	48342	0.1721742456647471	No Hit
ATATTGTACTCTGCGTTGATACCACTGCTTCCGCGGACAGGCGTGTAGAT	33105	0.11790634236753655	No Hit
AGCTTATGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAA	33082	0.11782442586324858	No Hit
GTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAAT	31815	0.11331189495312416	No Hit
GGTATGCACTCTTATATTTATTTCTACATCTAGGATCCGATTTGTATCAT	29381	0.10464299184717087	No Hit
GAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTT	28969	0.10317561794427328	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGTATG	8945	38.591717	7
GGTATGC	11525	37.26408	1
TGCACTC	11745	37.130127	5
ATAGGTA	9650	35.898216	5
TAGGTAT	10205	33.584763	6
TATAGGT	12155	33.45216	4
ATGCACT	15340	28.98907	4
GGGACCT	4585	28.935802	5
ATATAGG	14525	28.332668	3
TAGGGCA	4345	27.141418	5
GCACTCT	16555	26.4905	6
TATGCAC	18975	25.475447	3
TCCTGCT	11535	24.28205	7
TCTACCC	4020	23.988548	8
TCTTATA	53740	23.924803	2
TATCCTG	14060	23.808512	5
ATCCTGC	12925	23.570686	6
CTACCCC	5670	23.507534	9
CTCTTAT	57590	23.300203	1
AGTACTC	34610	23.177292	5