[2021-05-27 18:02:40,833] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-05-27 18:02:40,833] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-05-27 18:02:40,834] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-05-27 18:02:40,834] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-05-27 18:02:40,834] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-05-27 18:02:40,835] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HTHHKBGXH/merged [2021-05-27 18:02:42,177] multiqc [WARNING] MultiQC Version v1.10.1 now available! [2021-05-27 18:02:42,221] multiqc [INFO ] This is MultiQC v1.9 [2021-05-27 18:02:42,221] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HTHHKBGXH/merged [2021-05-27 18:02:42,221] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HTHHKBGXH/merged [2021-05-27 18:02:42,221] multiqc [INFO ] Template : default [2021-05-27 18:02:42,221] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-05-27 18:02:42,221] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HTHHKBGXH/merged [2021-05-27 18:02:42,222] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-05-27 18:02:42,222] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-7188074/tmpr4pmtcgo [2021-05-27 18:02:42,348] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A02-fd_fastqc.html [2021-05-27 18:02:42,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A02-fd_fastqc.html [2021-05-27 18:02:42,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B02-fd_fastqc.html [2021-05-27 18:02:42,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B02-fd_fastqc.html [2021-05-27 18:02:42,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F11-fd_fastqc.html [2021-05-27 18:02:42,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F11-fd_fastqc.html [2021-05-27 18:02:42,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_G11-fd_fastqc.html [2021-05-27 18:02:42,501] multiqc [DEBUG ] File ignored by longranger/invocation because 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search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A07-fd_fastqc.html [2021-05-27 18:02:45,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A07-fd_fastqc.html [2021-05-27 18:02:45,190] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A06-fd_fastqc.html [2021-05-27 18:02:45,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A06-fd_fastqc.html [2021-05-27 18:02:45,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E02-fd_fastqc.html [2021-05-27 18:02:45,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E02-fd_fastqc.html [2021-05-27 18:02:45,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D04-fd_fastqc.html [2021-05-27 18:02:45,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D04-fd_fastqc.html [2021-05-27 18:02:45,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B07-fd_fastqc.html [2021-05-27 18:02:45,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B07-fd_fastqc.html [2021-05-27 18:02:45,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C03-fd_fastqc.html [2021-05-27 18:02:45,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C03-fd_fastqc.html [2021-05-27 18:02:45,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_G04-fd_fastqc.html [2021-05-27 18:02:45,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_G04-fd_fastqc.html [2021-05-27 18:02:45,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F09-fd_fastqc.html [2021-05-27 18:02:45,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F09-fd_fastqc.html [2021-05-27 18:02:45,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B05-fd_fastqc.html [2021-05-27 18:02:45,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B05-fd_fastqc.html [2021-05-27 18:02:45,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D03-fd_fastqc.html [2021-05-27 18:02:45,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D03-fd_fastqc.html [2021-05-27 18:02:45,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E05-fd_fastqc.html [2021-05-27 18:02:45,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E05-fd_fastqc.html [2021-05-27 18:02:45,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F12-fd_fastqc.html [2021-05-27 18:02:45,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F12-fd_fastqc.html [2021-05-27 18:02:45,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C07-fd_fastqc.html [2021-05-27 18:02:45,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C07-fd_fastqc.html [2021-05-27 18:02:46,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C02-fd_fastqc.html [2021-05-27 18:02:46,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C02-fd_fastqc.html [2021-05-27 18:02:46,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C09-fd_fastqc.html [2021-05-27 18:02:46,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C09-fd_fastqc.html [2021-05-27 18:02:46,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A10-fd_fastqc.html [2021-05-27 18:02:46,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A10-fd_fastqc.html [2021-05-27 18:02:46,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C04-fd_fastqc.html [2021-05-27 18:02:46,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C04-fd_fastqc.html [2021-05-27 18:02:46,247] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B10-fd_fastqc.html [2021-05-27 18:02:46,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B10-fd_fastqc.html [2021-05-27 18:02:46,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B06-fd_fastqc.html [2021-05-27 18:02:46,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B06-fd_fastqc.html [2021-05-27 18:02:46,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_H01-fd_fastqc.html [2021-05-27 18:02:46,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_H01-fd_fastqc.html [2021-05-27 18:02:46,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C06-fd_fastqc.html [2021-05-27 18:02:46,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_C06-fd_fastqc.html [2021-05-27 18:02:46,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D07-fd_fastqc.html [2021-05-27 18:02:46,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D07-fd_fastqc.html [2021-05-27 18:02:46,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A01-fd_fastqc.html [2021-05-27 18:02:46,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_A01-fd_fastqc.html [2021-05-27 18:02:46,585] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F06-fd_fastqc.html [2021-05-27 18:02:46,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F06-fd_fastqc.html [2021-05-27 18:02:46,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D06-fd_fastqc.html [2021-05-27 18:02:46,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_D06-fd_fastqc.html [2021-05-27 18:02:46,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E07-fd_fastqc.html [2021-05-27 18:02:46,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E07-fd_fastqc.html [2021-05-27 18:02:46,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F05-fd_fastqc.html [2021-05-27 18:02:46,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F05-fd_fastqc.html [2021-05-27 18:02:46,817] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_G06-fd_fastqc.html [2021-05-27 18:02:46,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_G06-fd_fastqc.html [2021-05-27 18:02:46,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F07-fd_fastqc.html [2021-05-27 18:02:46,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_F07-fd_fastqc.html [2021-05-27 18:02:46,908] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B01-fd_fastqc.html [2021-05-27 18:02:46,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_B01-fd_fastqc.html [2021-05-27 18:02:46,969] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E11-fd_fastqc.html [2021-05-27 18:02:46,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTHHKBGXH_n01_S11_R1_E11-fd_fastqc.html [2021-05-27 18:02:47,288] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-05-27 18:02:47,290] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-05-27 18:02:47,469] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 385 samples (table) [2021-05-27 18:02:47,470] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-05-27 18:02:47,480] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-05-27 18:02:47,484] multiqc [DEBUG ] No samples found: conpair [2021-05-27 18:02:47,489] multiqc [DEBUG ] No samples found: peddy [2021-05-27 18:02:47,494] multiqc [DEBUG ] No samples found: somalier [2021-05-27 18:02:47,499] multiqc [DEBUG ] No samples found: methylQA [2021-05-27 18:02:47,510] multiqc [DEBUG ] No samples found: mosdepth [2021-05-27 18:02:47,513] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-05-27 18:02:47,519] multiqc [DEBUG ] No samples found: qualimap [2021-05-27 18:02:47,524] multiqc [DEBUG ] No samples found: preseq [2021-05-27 18:02:47,530] multiqc [DEBUG ] No samples found: quast [2021-05-27 18:02:47,535] multiqc [DEBUG ] No samples found: qorts [2021-05-27 18:02:47,539] multiqc [DEBUG ] No samples found: rna_seqc [2021-05-27 18:02:47,545] multiqc [DEBUG ] No samples found: rockhopper [2021-05-27 18:02:47,549] multiqc [DEBUG ] No samples found: rsem [2021-05-27 18:02:47,568] multiqc [DEBUG ] No samples found: rseqc [2021-05-27 18:02:47,571] multiqc [DEBUG ] No samples found: busco [2021-05-27 18:02:47,577] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-05-27 18:02:47,581] multiqc [DEBUG ] No samples found: disambiguate [2021-05-27 18:02:47,586] multiqc [DEBUG ] No samples found: supernova [2021-05-27 18:02:47,605] multiqc [DEBUG ] No samples found: deeptools [2021-05-27 18:02:47,610] multiqc [DEBUG ] No samples found: sargasso [2021-05-27 18:02:47,615] multiqc [DEBUG ] No samples found: verifybamid [2021-05-27 18:02:47,620] multiqc [DEBUG ] No samples found: mirtrace [2021-05-27 18:02:47,624] multiqc [DEBUG ] No samples found: happy [2021-05-27 18:02:47,630] multiqc [DEBUG ] No samples found: mirtop [2021-05-27 18:02:47,637] multiqc [DEBUG ] No samples found: homer [2021-05-27 18:02:47,641] multiqc [DEBUG ] No samples found: macs2 [2021-05-27 18:02:47,647] multiqc [DEBUG ] No samples found: theta2 [2021-05-27 18:02:47,651] multiqc [DEBUG ] No samples found: snpeff [2021-05-27 18:02:47,658] multiqc [DEBUG ] No samples found: gatk [2021-05-27 18:02:47,664] multiqc [DEBUG ] No samples found: htseq [2021-05-27 18:02:47,671] multiqc [DEBUG ] No samples found: bcftools [2021-05-27 18:02:47,676] multiqc [DEBUG ] No samples found: featureCounts [2021-05-27 18:02:47,685] multiqc [DEBUG ] No samples found: fgbio [2021-05-27 18:02:47,703] multiqc [DEBUG ] No samples found: dragen [2021-05-27 18:02:47,710] multiqc [DEBUG ] No samples found: dedup [2021-05-27 18:02:47,717] multiqc [DEBUG ] No samples found: damageprofiler [2021-05-27 18:02:47,739] multiqc [DEBUG ] No samples found: biobambam2 [2021-05-27 18:02:47,744] multiqc [DEBUG ] No samples found: mtnucratio [2021-05-27 18:02:47,746] multiqc [DEBUG ] No samples found: picard [2021-05-27 18:02:47,750] multiqc [DEBUG ] No samples found: prokka [2021-05-27 18:02:47,754] multiqc [DEBUG ] No samples found: samblaster [2021-05-27 18:02:47,763] multiqc [DEBUG ] No samples found: samtools [2021-05-27 18:02:47,770] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-05-27 18:02:47,778] multiqc [DEBUG ] No samples found: bamtools [2021-05-27 18:02:47,782] multiqc [DEBUG ] No samples found: jellyfish [2021-05-27 18:02:47,793] multiqc [DEBUG ] No samples found: vcftools [2021-05-27 18:02:47,798] multiqc [DEBUG ] No samples found: longranger [2021-05-27 18:02:47,802] multiqc [DEBUG ] No samples found: stacks [2021-05-27 18:02:47,808] multiqc [DEBUG ] No samples found: varscan2 [2021-05-27 18:02:47,832] multiqc [DEBUG ] No samples found: bbmap [2021-05-27 18:02:47,837] multiqc [DEBUG ] No samples found: bismark [2021-05-27 18:02:47,842] multiqc [DEBUG ] No samples found: biscuit [2021-05-27 18:02:47,846] multiqc [DEBUG ] No samples found: hicexplorer [2021-05-27 18:02:47,851] multiqc [DEBUG ] No samples found: hicup [2021-05-27 18:02:47,858] multiqc [DEBUG ] No samples found: hicpro [2021-05-27 18:02:47,867] multiqc [DEBUG ] No samples found: salmon [2021-05-27 18:02:47,875] multiqc [DEBUG ] No samples found: kallisto [2021-05-27 18:02:47,885] multiqc [DEBUG ] No samples found: slamdunk [2021-05-27 18:02:47,895] multiqc [DEBUG ] No samples found: star [2021-05-27 18:02:47,900] multiqc [DEBUG ] No samples found: hisat2 [2021-05-27 18:02:47,906] multiqc [DEBUG ] No samples found: tophat [2021-05-27 18:02:47,912] multiqc [DEBUG ] No samples found: bowtie2 [2021-05-27 18:02:47,916] multiqc [DEBUG ] No samples found: bowtie1 [2021-05-27 18:02:47,922] multiqc [DEBUG ] No samples found: snpsplit [2021-05-27 18:02:47,928] multiqc [DEBUG ] No samples found: kat [2021-05-27 18:02:47,932] multiqc [DEBUG ] No samples found: leehom [2021-05-27 18:02:47,938] multiqc [DEBUG ] No samples found: adapterRemoval [2021-05-27 18:02:47,944] multiqc [DEBUG ] No samples found: clipandmerge [2021-05-27 18:02:47,948] multiqc [DEBUG ] No samples found: cutadapt [2021-05-27 18:02:47,954] multiqc [DEBUG ] No samples found: flexbar [2021-05-27 18:02:47,960] multiqc [DEBUG ] No samples found: kaiju [2021-05-27 18:02:47,970] multiqc [DEBUG ] No samples found: kraken [2021-05-27 18:02:47,981] multiqc [DEBUG ] No samples found: malt [2021-05-27 18:02:47,991] multiqc [DEBUG ] No samples found: trimmomatic [2021-05-27 18:02:48,002] multiqc [DEBUG ] No samples found: sickle [2021-05-27 18:02:48,011] multiqc [DEBUG ] No samples found: skewer [2021-05-27 18:02:48,021] multiqc [DEBUG ] No samples found: sortmerna [2021-05-27 18:02:48,029] multiqc [DEBUG ] No samples found: biobloomtools [2021-05-27 18:02:48,039] multiqc [DEBUG ] No samples found: fastq_screen [2021-05-27 18:02:48,049] multiqc [DEBUG ] No samples found: afterqc [2021-05-27 18:02:48,060] multiqc [DEBUG ] No samples found: fastp [2021-05-27 18:02:52,259] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTHHKBGXH_n01_S11_R1_G08-fd_fastqc.zip' - Bad zip file [2021-05-27 18:02:52,259] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-05-27 18:02:52,852] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'HTHHKBGXH_n01_S11_R1_F01-fd_fastqc.zip' - Bad zip file [2021-05-27 18:02:52,852] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error: File is not a zip file [2021-05-27 18:02:55,405] multiqc.modules.fastqc.fastqc [INFO ] Found 79 reports [2021-05-27 18:02:56,008] multiqc [DEBUG ] No samples found: pycoqc [2021-05-27 18:02:56,014] multiqc [DEBUG ] No samples found: minionqc [2021-05-27 18:02:56,020] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-05-27 18:02:56,025] multiqc [DEBUG ] No samples found: clusterflow [2021-05-27 18:02:56,030] multiqc [DEBUG ] No samples found: bcl2fastq [2021-05-27 18:02:56,034] multiqc [DEBUG ] No samples found: interop [2021-05-27 18:02:56,040] multiqc [DEBUG ] No samples found: ivar [2021-05-27 18:02:56,044] multiqc [DEBUG ] No samples found: flash [2021-05-27 18:02:56,048] multiqc [DEBUG ] No samples found: seqyclean [2021-05-27 18:02:56,048] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-05-27 18:02:56,048] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-05-27 18:02:56,048] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-05-27 18:02:56,048] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-05-27 18:02:56,139] multiqc [INFO ] Compressing plot data [2021-05-27 18:02:57,265] multiqc [INFO ] Report : multiqc_report.html [2021-05-27 18:02:57,265] multiqc [INFO ] Data : multiqc_data [2021-05-27 18:02:57,265] multiqc [DEBUG ] Moving data file from '/state/partition1/job-7188074/tmpr4pmtcgo/multiqc_data' to '/scratch/gencore/logs/html/HTHHKBGXH/merged/multiqc_data' [2021-05-27 18:02:57,398] multiqc [INFO ] MultiQC complete