FastQCFastQC Report
Thu 27 May 2021
HTHHKBGXH_n01_S11_R1_D12-fd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTHHKBGXH_n01_S11_R1_D12-fd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences723828
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATATACTTACACAGTTTGAGCATTCACAGGCCACTAGAAGCCCATCT17450.24107937244759806No Hit
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG14690.20294876683410978No Hit
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA14500.20032383383897834No Hit
GTATATATGTATGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAA11630.1606735301756771No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)