FastQCFastQC Report
Tue 10 Oct 2023
HTHGHDSX5_n01_sr5965_2_01_a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTHGHDSX5_n01_sr5965_2_01_a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405390296
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTAATACTATGCAAAAATGTAAAATCATCACACA5051460.12460732409835483No Hit
GTATTAGGTAGTCAGATGAAAGATGAATAGACATAG4196820.10352541837853957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)