FastQCFastQC Report
Fri 15 Jan 2021
HTHCTDRXX_l02_n01_ZmTARGET.20190625-4432-minusN-02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTHCTDRXX_l02_n01_ZmTARGET.20190625-4432-minusN-02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7537672
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGA216660.28743622699422317No Hit
CAACCATAAACGATGCCGACCAGGGATCAGCGGGTGTTACTAATAGGACC145870.19352128880110464No Hit
GGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGA121010.16054028352520514No Hit
CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGA82690.10970230596396341No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)