FastQCFastQC Report
Fri 15 Jan 2021
HTHCTDRXX_l02_n01_ZmTARGET.20190625-3460-minusN-02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTHCTDRXX_l02_n01_ZmTARGET.20190625-3460-minusN-02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8829274
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGA365590.4140657544436836No Hit
GGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGA118740.13448444345480726No Hit
CAACCATAAACGATGCCGACCAGGGATCAGCGGGTGTTACTAATAGGACC117420.13298941679689633No Hit
CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGA107420.12166345726726796No Hit
GCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGA89810.10171844253559238No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)