FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n02_S2_R2_A02_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n02_S2_R2_A02_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1347
Sequences flagged as poor quality0
Sequence length151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTTACAGTGTCTTTTGTCCCTGAAGCAGGGTCTCCCCGTAGCTCAAGG40.2969561989606533No Hit
AACTAGAACAAATAATCCTAAAATTTGTATGGAACCACAAAAGAGCCTGA20.14847809948032664No Hit
CTTTTGTGGTTCCATACAAATTTTAGGATTATTTGTTCTAGTTCTGTGAG20.14847809948032664No Hit
TTACTATAGTCTTTAATCTGGGGCAGTTTCCTAGCTTCATGACATGTTCT20.14847809948032664No Hit
CTTAGAAAGTGTGCTGTAAAGGCCAAATAGGAATTAGTCCAAGTTGTTTA20.14847809948032664No Hit
GTATAGACATCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT20.14847809948032664No Hit
TACTTACACAGTTTGAGCATTCACAGGCCACTAGAAGCCCATCTGTGGCA20.14847809948032664No Hit
CCTCCATGCTTCTCTGAGGCTCTGCATCCTTGCATTGTTGCTGTAAATGC20.14847809948032664No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)