FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n02_S1_R2_A06_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n02_S1_R2_A06_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1993
Sequences flagged as poor quality0
Sequence length151
%GC46

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATGAACTGCTAGGGAAAAATTTCTCGAATAGATTGCAGCACTTCT30.15052684395383845No Hit
TTTCTTCTCTGTTTAATTTTGCTTCCTCTGAGTATTTTGGGTAGTCATAA20.10035122930255895No Hit
CATTAAGTGGCTGCCTTCAGCTCAGGTCATGATCCCAGGGTTCTGGGATT20.10035122930255895No Hit
GTATAGCCATCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT20.10035122930255895No Hit
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA20.10035122930255895No Hit
GTGCCACAGCACACAGATTGGTGGAACAAGGATGGTAGACATTCTTAGAC20.10035122930255895No Hit
GAAATAGAATGATGGTTACCAGGGACTAAAGGGAGGTGGTCATGGGGAGT20.10035122930255895No Hit
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG20.10035122930255895No Hit
CTCTTATTCAGTCTTTGTTTTTTCTTCCCTATTGTTCTTTGCGTGACCAT20.10035122930255895No Hit
CAACGATTCAAGTGATCCTCTTGTTGTTGCCGCAAGTATCATTGGGATTT20.10035122930255895No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)