FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n02_S1_R2_A04_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n02_S1_R2_A04_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACTATATGATGCAATCAAATGCATGAAGACATTCTTTGGCTGGAAAGA22.1505376344086025No Hit
GATATTTGCTGCAATGACGAGAGGATCACTTGAATCGCTGCATCTGCACT22.1505376344086025No Hit
AAACAAATCTTTTCTCCAAAAATACAGGGAAAATGGGCAAACCACTGGCT11.0752688172043012No Hit
CCTGCACACTTTCCCAATAGAGCCTTCCTCCACTCCCCTGGGTGACTCTC11.0752688172043012No Hit
ATCAAAAAGTACACATCAGGAAGGCAAGAGAAGAACCCCGCACTCAGAAT11.0752688172043012No Hit
ATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGGCTGTCAGTAAGTA11.0752688172043012No Hit
CCCAGGCGGGGGGATTGCTGGATCAGCCGGTATTTCTAGTTTTTTATTTT11.0752688172043012No Hit
ACAATATTGTTCTTCCAATCCATGAGCATGGATTGTCTTCCCGTTTGTTT11.0752688172043012No Hit
TGCCTCAAGAGTTGGTGCATGGGGTTCAGTCGCTGGTTTGCCCTATTGAC11.0752688172043012No Hit
GCAGTCTCCCTCGAGGACACTAGCAGCGCCCGGACCCCATGTTTAAGAAG11.0752688172043012No Hit
AAATAAGACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGAT11.0752688172043012No Hit
TTAAAGTGGTTTTGCTGCTGTTACTTGGCACCGAACTAAGGAGTTGGATA11.0752688172043012No Hit
TTCCAGGTTGTCCCTAAGTGCCTGAACAATGAGAAGCAATTTTCTAGATT11.0752688172043012No Hit
GATTTAATTTTGTTGGCCTTTTACAGATAGTATATGTGAACTTCCCTCCC11.0752688172043012No Hit
GTATGGAGAGGATCTGATAGTCGAAACAAACAAATTTGCAGCAATATGCA11.0752688172043012No Hit
TCTTACCAGTATCCTCAACCCTGATCCTCTCACATTCACAGTCAATGAGG11.0752688172043012No Hit
GACCTGCATGGTGGGGGTGATATTGGGAAGGGAGACACGTCAGATCCCCA11.0752688172043012No Hit
GAATAAGAGAGGCTATCTAATAAGAGCACTGACATTAAATACGATGACCA11.0752688172043012No Hit
GCTGAAGCCTAGAGTTTTCTAGCCAGTTACGGGTCGCGAATGGCCGCCAG11.0752688172043012No Hit
ATCCTGAGCATGGCACCTATAATGTTCTCAAACAAAATGGCAAGACTAGG11.0752688172043012No Hit
GTCCAAGCCAGAAAGGTGGCAGCTGCCATGATTGGGTTTTCTGCCCAGGT11.0752688172043012No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.0752688172043012No Hit
ACTTGAATCGCTGCATATGCACTCACATTCGCTTCTGGTAGGCCTGCAAA11.0752688172043012No Hit
CCAGAGGGGAGCCCCACAAATTCAGACGAGAAGATCATTTGAGTTAAAGA11.0752688172043012No Hit
CCCATGCACCAACTCTTGAGGCATTTCCAAAAAGATGCAAAAGTGCTTTT11.0752688172043012No Hit
TAATGAAACTAACTAAGTACAATTCTAAAAGTTCTATTTTATGAAACGAG11.0752688172043012No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGG11.0752688172043012No Hit
ATACAAGCCCTGGCCATGCAGATCTCAGTCCCAAGGAGGCACAGGATGTG11.0752688172043012No Hit
GTTTAAGGTCTCCAACATCTTTGCAGTCATCAAAGTCTTCTTTTTCTGGT11.0752688172043012No Hit
CTTTAGATCGAATGGCCTAACAGCTAATGAGTCAGGAAGGCTAATAGATT11.0752688172043012No Hit
ACCCGCGCGCCAGGCGCTGGGCCGGCTTTGCAGGCAACCCCCTGGCCGAG11.0752688172043012No Hit
GGTACATTCCCAGCTGTCCCATCTTCTGTCCCCCCCCATTCACTTGACGC11.0752688172043012No Hit
ATGTCGTTCTTCACTTGTTATGTCTGGCTCTTCAGTGTCCCCTTTTCCCC11.0752688172043012No Hit
CCGCCGGCTACTGGGAGAAACCTTGTTTTACGGACCAATTCTCTTTCTAG11.0752688172043012No Hit
GCTGTGCGGTCTCCCTGAGTCTCTTCATCTGTGGGCCTCAGTTCCCTCAT11.0752688172043012No Hit
CCTCTCCCCTTCCAGGCTCTGGGGCCTCCTTCCCAGGCTGTAGTTGGAGG11.0752688172043012No Hit
ATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTAGCAGTCCC11.0752688172043012No Hit
TCCTTGTTGATTCCAGCTTTACCCCATCTATTTCTTCTCTGTTTAATTTT11.0752688172043012No Hit
GTCTGGCTGTCAGTAAGTATGCTAGAGTCCCGTTTTCGTTTCATTTCCAA11.0752688172043012No Hit
GGGTAATGAACTGTACTTGTTGTTGGGCCATTCCTATTCCACCATGTTAC11.0752688172043012No Hit
CCAATTGAAGTGGGCACTCGGTGAAAATATGGCACCAGAAAAAGTAGACT11.0752688172043012No Hit
GTTTAATCCTGTTAGAGACTTTTATTTAAATTCCTAAATCAACATTTTTT11.0752688172043012No Hit
GCGATAACACGTGCATGGAAAGTGTCAAAAATGGGACTTATGACTACCCA11.0752688172043012No Hit
CTGTAATTGGGTATCTCATTGCCATCATCCACTTCATTCTGAGTGCGGGG11.0752688172043012No Hit
CAATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGG11.0752688172043012No Hit
AATATATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTACTGTCGCA11.0752688172043012No Hit
CTTGTTTGTTGAACAACTTCCATTGTTTCAAGGCATGAATTCTCAAATAT11.0752688172043012No Hit
GGCAACCAGAAGCCGGTACAGTGGATTCGTAAGGACACTGTTCCAGCAAA11.0752688172043012No Hit
TTTCTCCCATTGTGTAGATTGCCTTTGGAGTCTGTCGATGGTGTTCTTCG11.0752688172043012No Hit
GCTTGATTTGGCTAGATATGTGATATGATATACATTACGAGAATAGCATA11.0752688172043012No Hit
TCCCAATGATAAGCAAATGTAGGACAAAAGAAGGAAGACGGAAAACAACC11.0752688172043012No Hit
GCGCGGGAGGGGTCGGGGGGGCGGCGGGGGCGGCGGTGGGGCGGGGGGGG11.0752688172043012No Hit
CATTTGCCTTCTCTCCTTTTGCAAGATTGCTCAGTTCATCGTTTGTTTTG11.0752688172043012No Hit
CCGCACGAAGGGGTCAATTTTGGCGGGCACTGCGTGGGACCTGTGGGANN11.0752688172043012No Hit
GTATGCTAGAGTCCCGTTTTCGTTTCATTACCAACACTACGTCCCCTTGC11.0752688172043012No Hit
CTTCTCTTCATCATAGTATCAGAGTTTCTAGGCAGTACAGTGAGGCAAGA11.0752688172043012No Hit
TAATAAAACAACGACATTACAATTAAAAAAGTATGTTTATCTATATGGAT11.0752688172043012No Hit
AAATGGAAGACTTTGTGCGACAATGCTTCACTCCAATGATCGTCGAGCTT11.0752688172043012No Hit
GTCCCGCACTCGCGAGATACTCACTAAGACCACTGTGGCCCATATGGCCA11.0752688172043012No Hit
GAAACCTTGTTTTACGGACCAATTCTCTTTCTAGCATGTACGCCACCAGC11.0752688172043012No Hit
ATGAAGGGAGTGTACATAAATACGGCCTTGCTCAATGCATCCTGTGCAGC11.0752688172043012No Hit
AACTATTGCTCCCTCCTCAGTGAAAGCCCTTAGTAGTATCAAGGTCTCTA11.0752688172043012No Hit
CTCTTATTCAGTCTTTGTTTTTTCTTCCCTATTGTTCTTTGCGTGACCAT11.0752688172043012No Hit
GTGCGTATATTGAAGTGTTGCACTTAAACCAAGGGCCGTGCTGGGAGCAG11.0752688172043012No Hit
GTGTGGAGGTTGCCCGTTAGCGGTTCTTCTTCTTTCTTGAGTGATGGTCG11.0752688172043012No Hit
GTGGTACAGCAGGTGTCAACATTTTCTTCCCGCTTAAGAGTTGAAATATG11.0752688172043012No Hit
CATTAAATACGATGACCAAAGATGCAGAGAGAGGCAAGTTAAAAAGAAGG11.0752688172043012No Hit
CCCAATTACAGCAGACAAGAGAATAATGGACATGATTCCAGAGAGGAATG11.0752688172043012No Hit
GAGAAGAACCCCGCACTCAGAATGAAGTGGATGATGGCAATGAGATACCC11.0752688172043012No Hit
ATATTTTCAGTGCGCATGGCAATGATCAAGTCTAGGCTTTTCACTATAAG11.0752688172043012No Hit
AGAAGAGGCCTTATTTTCTCAATTTTCTTCTTTGTTGATTCATTGAAGTA11.0752688172043012No Hit
CTCCTATTTCATCAAGTTCTATCCAGCTTGAATCAGTCAATTCACATGCC11.0752688172043012No Hit
GCCCATGCAACTGGCAAGTGCACCAGTTGAATAGCTTAGTGACACCTCCT11.0752688172043012No Hit
CCTCATAAGTATGTCCTGGAAGAGAAGGTAATGGTGAAATTTCTCCAACT11.0752688172043012No Hit
GTTTTTTATCATTAAATAAGCTGAAACGAGAAAGCTCTTATCTCTTGTTC11.0752688172043012No Hit
TTTTTAAACAATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCG11.0752688172043012No Hit
TCCAAGGTCATTGTTTATCATGTTGTTCTTTATCACTGTTACTCCAATAC11.0752688172043012No Hit
TACCAACACTACGTCCCCTTGCCCAATTAGCACATTAGCCTTCTCTCCTT11.0752688172043012No Hit
TATTTGCATTATGGCATGAAAACCATGGGGCAGGTTTTCCCGCTGCAAGT11.0752688172043012No Hit
GCAATCCAGGTTTCTCTTGAAACTTACATCCTAAGCTACATCCTCACCCT11.0752688172043012No Hit
TGCCTGTTCCGCCGGCTACTGGGAGAAACCTTGTTTTACGGACCAATTCT11.0752688172043012No Hit
ATCCAGCATCGTTTGTTTTGCTCCAGAGGGTTTGTCCTTGTTCATTCCTC11.0752688172043012No Hit
GGGTGGGGGGGGGGGGGGGGGTGGTGTTGGGGTGGGGGGGGCGGGGGGGG11.0752688172043012No Hit
ATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAACAGATGTACCA11.0752688172043012No Hit
CTACAGGGATGGCTCAGTTGGTTAAGCATCTGCCTTCAGCTCAGGTCATG11.0752688172043012No Hit
TATCGGATGTTGATCAGATATGTGACATCGTCTGTGGAGGTTCGACCACC11.0752688172043012No Hit
GTGGAACAGATCTTCATGATCTCAGAGAACTCTTCTTTCTTGATCCGTCC11.0752688172043012No Hit
AGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCC11.0752688172043012No Hit
GTATGCTAGAGTCCCGGTTTAGTTTGATTTCCAACACTACGTGCCCTTGC11.0752688172043012No Hit
GTCCTGAGAGGATTTCTCATTTTGGGCAAAGAAGACAAGAGGCCCAGCAT11.0752688172043012No Hit
CTATTAGAAGAGGCCTTATTTTCTCAATTTTCTTCTTTGTTGATTCATTG11.0752688172043012No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTGCA50.0145.09
ACTTGAA50.0145.01
CCTCCAT50.0145.0145
TCGCTGC50.0145.08
GAATCGC50.0145.05
TTGAATC50.0145.03
ATCGCTG50.0145.07
CTTGAAT50.0145.02
TGAATCG50.0145.04
AATCGCT50.0145.06